Pairwise Alignments

Query, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

Subject, 182 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 85.9 bits (211), Expect = 4e-22
 Identities = 49/185 (26%), Positives = 91/185 (49%), Gaps = 10/185 (5%)

Query: 6   EDQQLVERVQRGDRR--AFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALG 63
           +D  L++ +     R   + +LV  YQ +I  +I + V    +A D+ Q  F+KA++ + 
Sbjct: 5   DDTSLLKLINNPQTREKGYRMLVNHYQKRIYSIIRKMVIIHEDADDLVQNTFVKAFKNIN 64

Query: 64  NFRGDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERSL 123
           NF+ DS+ +TWLYRIAIN   N+L  + +R              D +H +         +
Sbjct: 65  NFKRDSSLFTWLYRIAINECLNFLEKKKKR--------NFFRLEDHEHKMAGYLDSTLHI 116

Query: 124 LRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAID 183
             DEI+  + + + +LP+  R    ++ F+ LSY  I+ + +   G +++    A + I+
Sbjct: 117 EGDEIQLLLQKLLLKLPKKQRLVFNMKYFENLSYAQISEITKTSEGALKASYHHAVKKIE 176

Query: 184 KALQP 188
             + P
Sbjct: 177 NEINP 181