Pairwise Alignments

Query, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

Subject, 200 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 73.2 bits (178), Expect = 3e-18
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 6/186 (3%)

Query: 6   EDQQLVERVQRGDRRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGN- 64
           +D +L+ + + G   AF++LV KY+ ++   I   V D   A+D+ Q+ F+K  + L + 
Sbjct: 8   KDSELIAQYRNGSEAAFEVLVDKYKSRVFTTIYMIVKDQGLAEDLLQDVFVKVIQTLNSD 67

Query: 65  -FRGDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERSL 123
            +  +  F  WL RIA N A +Y     R P    +  ED           D  + E   
Sbjct: 68  RYNEEGKFQPWLMRIAHNLAVDYFRKMKRYP---FIMMEDGSNLFNTLKFAD-SNVEDQQ 123

Query: 124 LRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAID 183
           ++DE    V   I +LPE  +  L +R +  LS+++IA      + T   R+  A   + 
Sbjct: 124 VKDETHALVRDLIDELPESQKQVLIMRHYMDLSFQEIADQTGVSINTALGRMRYALINMR 183

Query: 184 KALQPL 189
           K L+ +
Sbjct: 184 KKLKQI 189