Pairwise Alignments

Query, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

Subject, 196 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 82.8 bits (203), Expect = 4e-21
 Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 2/166 (1%)

Query: 22  FDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAIN 81
           FD   + +   +     R   D  +A+D+ Q+ ++KAYR + +F   +    WL+RI  N
Sbjct: 18  FDHEFMPHIDSMYNFAFRLTFDEDDAKDLVQDTYLKAYRFINSFEQGTNAKAWLFRILKN 77

Query: 82  TAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPER-SLLRDEIEGTVHRTIQQLP 140
           +  N    + ++P   D    +  +Y+ D    ++ S  R   ++D +   +   +  L 
Sbjct: 78  SFINEYRKKSKQPSKVDYQEVET-YYNSDSVDYNITSDLRVDAVKDMLGDEISNALNSLA 136

Query: 141 EDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKAL 186
            D RT + L + +G +YE++A ++  P+GTVRSR+ RAR  + + L
Sbjct: 137 VDFRTVIILCDLEGFTYEEMAKILDIPIGTVRSRLHRARNLLKEKL 182