Pairwise Alignments

Query, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

Subject, 180 a.a., RNA polymerase sigma factor from Agrobacterium fabrum C58

 Score = 76.6 bits (187), Expect = 2e-19
 Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 12/186 (6%)

Query: 2   LTQEEDQQLVERVQRGDRRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRA 61
           +  + D +LV  V  GD RA   LV     +I+ L  R + D  EA+DVAQE F++ ++ 
Sbjct: 1   MVSDPDAKLVADVAAGDIRAMRTLVEAKLPRIMALATRMLGDPVEAEDVAQETFLRIWKH 60

Query: 62  LGNFR-GDSAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPE 120
            G +R G + F TW++R+A+N   + L  R            DA     ++G  D++  E
Sbjct: 61  AGTWRQGAARFDTWIHRVALNLCYDRLRKRREISVAQPSDLADAR-TSSENGGADIDEGE 119

Query: 121 RSLLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRARE 180
                      V R +  +PE  R A+ L  +  +S  + A +M   V  + S + R R 
Sbjct: 120 ----------AVGRALSLIPERQREAIILVYYQEMSNREAADIMHVSVDALESLLSRGRR 169

Query: 181 AIDKAL 186
           A+ K L
Sbjct: 170 ALQKIL 175