Pairwise Alignments

Query, 230 a.a., ribosomal small subunit pseudouridine synthase A from Pseudomonas putida KT2440

Subject, 626 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 10/231 (4%)

Query: 2   RLDRFLANLPSYNRQNVRLMLAQRRVRVDGQVVSDPLTDVREFSRVELDEQLLQAGRPAR 61
           R+ + +A     +R+ +   +   RV V+G+V++ P   V     + +D + L      R
Sbjct: 31  RVAKVVARAGLGSRREIEEWIEAGRVAVNGEVLTSPAVTVTPADAITIDGEPLPERERTR 90

Query: 62  YLMLYKPTGCVSATHDPQHRTVL-DLLPAALRDDLHIAGRLDFNTTGLMILTNDGQWSRR 120
             + +KP G V+   DP+ RT L ++LP  L   L   GRLD N+ GL++LTNDG  +R 
Sbjct: 91  LFLYHKPKGVVTTNRDPEGRTTLFEILPKGL-PRLVSVGRLDLNSEGLLLLTNDGGLARV 149

Query: 121 LTQPATKLPKHYLVDTEDEIGEHYVAKFREGFYFAFEDLTTQPAQLDILGPHRA--RLAI 178
           L  P T   + Y V    EI +  +    +G      +     A+LD +    A   +++
Sbjct: 150 LELPETGWLRRYRVRANGEIDQAKLDTLIKGITVDGVEYGPIEAELDRVQGANAWITVSL 209

Query: 179 VEGRYHQVKRMFGHFNNKVIGLHRESMGAIRLDPGLAPGEYRELTANEIAT 229
            EG+  +++ +FG     V  L R S G  +L      GE  E +  E+ T
Sbjct: 210 REGKNREIRNVFGALGLAVNRLIRVSYGPFQL------GEIPEGSVEEVRT 254