Pairwise Alignments

Query, 230 a.a., ribosomal small subunit pseudouridine synthase A from Pseudomonas putida KT2440

Subject, 355 a.a., 23S rRNA pseudouridine 2605 synthase from Pseudomonas putida KT2440

 Score = 90.9 bits (224), Expect = 3e-23
 Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 15/237 (6%)

Query: 2   RLDRFLANLPSYNRQNVRLMLAQRRVRVDG-QVVSDPLTDVREFSRVELDEQLLQAGRPA 60
           +L + LA +   +R++V   ++Q R++V+G +       D+ +   + +D +L++    A
Sbjct: 18  KLQKVLARIGVGSRRDVEAWISQGRIKVNGVEATLGQRVDLHD--AIAVDGKLIKREEAA 75

Query: 61  ----RYLMLYKPTGCVSATHDPQHR-TVLDLLPAALRDDLHIAGRLDFNTTGLMILTNDG 115
               R +M  KP G +    DP+ R TV D LP          GRLD NTTGL++ T DG
Sbjct: 76  EATRRVIMYNKPDGEICTRDDPEGRPTVFDRLPRPKEGRWINIGRLDINTTGLLLFTTDG 135

Query: 116 QWSRRLTQPATKLPKHYLVDTEDEIGEHYVAKFREGFYF-----AFEDLTTQPAQLDILG 170
           + + RL  P+ ++ + Y V    E+ +  + + + G         F D+   P       
Sbjct: 136 ELANRLMHPSYEMDREYAVRVRGEVDDEMIERLKAGVMLEDGPAKFTDIQKAPGGEGF-- 193

Query: 171 PHRARLAIVEGRYHQVKRMFGHFNNKVIGLHRESMGAIRLDPGLAPGEYRELTANEI 227
            H     ++EGR  +V+R++      V  L R   G + L+  L  G +RE+T  EI
Sbjct: 194 NHWYHCVVMEGRNREVRRLWESQGMVVSRLKRVRFGPVFLNSDLPMGRWREMTQGEI 250