Pairwise Alignments

Query, 230 a.a., ribosomal small subunit pseudouridine synthase A from Pseudomonas putida KT2440

Subject, 233 a.a., rRNA pseudouridine synthase from Magnetospirillum magneticum AMB-1

 Score =  125 bits (313), Expect = 9e-34
 Identities = 92/238 (38%), Positives = 124/238 (52%), Gaps = 16/238 (6%)

Query: 1   MRLDRFLANLPSYNRQNVRLMLAQRRVRV-DGQVVSDPLTDVREFSRVE---LDEQLLQA 56
           MRL R +ANL   ++++V+ M+   RV + DG V+ D      +  RV+   LD      
Sbjct: 1   MRLIRLIANLGYGSQRDVKAMIKAGRVTLADGTVLDDGTKAAHDDIRVDGEPLDPP---- 56

Query: 57  GRPARYLMLYKPTGCVSATHDPQHRTVLDLLPAALRDDLHIA---GRLDFNTTGLMILTN 113
             P   LML+KP G   +T DP  R V +LLP        I    GRLD ++TGL++LT+
Sbjct: 57  --PGLVLMLHKPEGYTCSTSDPG-RIVYELLPERFMHRNPIVAPVGRLDRDSTGLLLLTD 113

Query: 114 DGQWSRRLTQPATKLPKHYLVDTEDEIGEHYVAKFREG-FYFAFEDLTTQPAQLDILGPH 172
           DG  + R+T P   +PK Y V     +     A F  G      E     PA+L + GP 
Sbjct: 114 DGPLAHRITSPKRHVPKTYEVTLARPLSGEEGAVFASGTLMLRSESTPLAPAELVVSGPQ 173

Query: 173 RARLAIVEGRYHQVKRMFGHFNNKVIGLHRESMGAIRLDPGLAPGEYRELTANEIATV 230
            AR+ I EGRYHQVKRMF    N V  LHR ++G + L   LA G++R L+  EIA V
Sbjct: 174 TARITITEGRYHQVKRMFAAVGNHVERLHRAAIGGLDLG-DLAEGQWRPLSPAEIALV 230