Pairwise Alignments

Query, 444 a.a., C4-dicarboxylate transport transcriptional regulatory protein from Pseudomonas putida KT2440

Subject, 453 a.a., Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake from Variovorax sp. SCN45

 Score =  428 bits (1100), Expect = e-124
 Identities = 222/444 (50%), Positives = 305/444 (68%), Gaps = 8/444 (1%)

Query: 5   VIVVDDEASIRTAVEQWLSLSGFSVELFARAEACLAHLPQHFPGVIISDVRMPGMDGLQL 64
           V++V+D+  +R +  Q L+L+GF VE FA AE   AH+    P ++ISDVR+PGM G + 
Sbjct: 9   VLLVEDDEDVRLSTTQVLTLAGFEVEAFASAERARAHISFGVPAIVISDVRLPGMSGTEW 68

Query: 65  LERLQANDPDLPVILLTGHGDVPMAVEAMRSGAYDFLEKPFTPQDLLGSLRRALEKRQLV 124
           L  L   D +LPVIL+TGHG + MAV+AMR GAYDF+EKPF+ + L+  +R A+E+RQL 
Sbjct: 69  LGELHTADAELPVILVTGHGHIAMAVQAMREGAYDFIEKPFSSERLVAIVRHAIERRQLT 128

Query: 125 LENRRLHEQADLKSRLEGTLLGMSQGLQQLRRQVLDLAGLPVNVLIRGETGSGKERVARC 184
           L+ R L +  +  + ++  L+G S  +QQ+RR V+ LA    +VLI GETG+GKE VA+C
Sbjct: 129 LQVRTLRDALENWNGIQSVLIGRSAQMQQVRRTVMTLAETSADVLIYGETGTGKELVAQC 188

Query: 185 LHDFGPRAAKPFVALNCAAIPESLFEAELFGHESGAFTGAQGKRIGKLEYANGGTVFLDE 244
           LH    R  + FV LNC  +PE+L E+ELFGHE+GAFT A   R+GK EYANGGT+FLDE
Sbjct: 189 LHAHSERRRRHFVPLNCGGLPEALAESELFGHEAGAFTSANRARVGKFEYANGGTLFLDE 248

Query: 245 IESMPLAQQAKLLRVIQEQKLERLGANQSISVDLRIIAATKPDLLEEARAGRFREDLAYR 304
           IESMP+  Q KLLR +QE+ +ER+G+N++I  D R++AA+K DL E +   +FR DL YR
Sbjct: 249 IESMPMPVQIKLLRALQERSIERIGSNKAIPFDCRVVAASKEDLKEMSDRQKFRADLYYR 308

Query: 305 LNVAELRLAPLRERREDIPLLFEHFARAAGEKLGRAAPPLSGAQLAQLLSHDWPGNVREL 364
           L VA + L PLRERREDIPLLFEHF   A  +  RAA PL+ AQLA L+++ WPGNVREL
Sbjct: 309 LGVAFIELPPLRERREDIPLLFEHFTLLAANRYERAAQPLTNAQLADLMAYAWPGNVREL 368

Query: 365 ANAAERHALGLGSPNI-------EVAPA-GQSLGEQMEAFEAQCLRAALRQHGGEIKSVM 416
            N A+R  LGL    +       E  PA  ++L +Q+EAFE   +  ALR+H G+  +  
Sbjct: 369 RNVADRFVLGLLGERLTQTRGTGEGLPALPRALPQQVEAFERAVIVEALRKHKGDQPATA 428

Query: 417 EALQLPRRTLNEKMQRHGLVREDF 440
            AL + R+TL++K+++  ++ +DF
Sbjct: 429 AALAIARQTLHDKLRKFDILADDF 452