Pairwise Alignments

Query, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

Subject, 380 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  292 bits (747), Expect = 1e-83
 Identities = 158/369 (42%), Positives = 231/369 (62%), Gaps = 15/369 (4%)

Query: 14  VALATLLSGCKKEEA-APAAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGI 72
           +AL   LS C    A AP     +V V T++ +   +TSEL GR +A R+AEVR +V G+
Sbjct: 12  LALTLALSACGDSAAEAPEMPLAKVRVETLEAKPLAITSELSGRIAAPRIAEVRARVAGV 71

Query: 73  ILKRLFKEGSEVKEGQQLYQIDPAVYEATLANAKANL-------LATRSLAERYKQLIDE 125
           +++R+FKEG +VK+G  L++IDPA ++A L +A+ANL          R   +RY QL++ 
Sbjct: 72  VMQRVFKEGHDVKQGDVLFRIDPAPFKADLDSAQANLSKAEADAFKARLQEQRYSQLVEG 131

Query: 126 QAVSKQEYDDA-------NAKRLQAEASLKSAQIDLRYTKVLAPISGRIGRSSFTEGALV 178
            A+S Q+YD+A       NA+    +A+++ A+++L Y  V APISGRIGR+  TEGALV
Sbjct: 132 NAISGQDYDNARAAVRQTNAEVAANKAAVERARLNLGYATVTAPISGRIGRALVTEGALV 191

Query: 179 SNGQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKAGDNAASVQLVLEDGSLF 238
              +   +A IQQLDPI+ D+TQST EL  LRR   +G L++ G + A   L+ +DGSL+
Sbjct: 192 GQNEATPLALIQQLDPIHADLTQSTRELNDLRRAFRAGSLKQVGQDQAKATLIEDDGSLY 251

Query: 239 KQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNANAILAPQQGVT 298
              G+L F+E++VD  TG + LR+ FPNPD  LLPG FV  RL+  V+   I  PQ+ +T
Sbjct: 252 PLPGKLLFAEISVDPGTGQIILRSEFPNPDLDLLPGSFVRVRLEQAVDKQGISVPQRAIT 311

Query: 299 RDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYVRPGVEVK 358
           RD  G P  L+++    V  + ++    +   W++  GL PGDR+I EGLQ+ RPG +V+
Sbjct: 312 RDSAGIPMVLLLDAGQTVSQQPVELGAVINDRWIVSSGLKPGDRIIVEGLQHARPGEKVE 371

Query: 359 VSDATNVKK 367
           V D+  VK+
Sbjct: 372 VDDSPLVKE 380