Pairwise Alignments

Query, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

Subject, 414 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  322 bits (826), Expect = 9e-93
 Identities = 189/397 (47%), Positives = 258/397 (64%), Gaps = 26/397 (6%)

Query: 8   TALVSAVALATL--LSGCKKEEAAPAA--------QAPQVGVVTIQPQAFTLTSELPGRT 57
           T L  A+A+  L  ++GC    ++ +A         A QVGVVT+QP+   +T+EL GRT
Sbjct: 18  TGLACALAIGLLGAIAGCSGSSSSSSALPGAPQGLAAAQVGVVTVQPENQPVTTELSGRT 77

Query: 58  SAYRVAEVRPQVNGIILKRLFKEGSEVKEGQQLYQIDPAVYEATLANAKANLL------- 110
            +   AE+RPQV GI+ +RLF+EG+ VK GQ LYQ+DPA Y+A  A+A+A++        
Sbjct: 78  RSRLSAEIRPQVGGIVQQRLFEEGALVKAGQVLYQLDPASYKAAYASAQASVAKSEATVN 137

Query: 111 ATRSLAERYKQLIDEQAVSKQEYDDANAKRLQAEA-------SLKSAQIDLRYTKVLAPI 163
           A +  A R  +L   +AVSKQ  +D+ A   QAEA       +L++A+I+L +T++ API
Sbjct: 138 AAKVTARRNAELAKIEAVSKQTSEDSQATLQQAEADLGVARAALETARINLGFTRITAPI 197

Query: 164 SGRIGRSSFTEGALVSNGQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQK-AG 222
           +GRI  S+ T GALV+  QT A+ T+QQLDP+YVDVTQST ELL+L+R+L +G L+  + 
Sbjct: 198 AGRIEASTVTPGALVTASQTTALTTVQQLDPVYVDVTQSTTELLQLQRELAAGTLKNGSA 257

Query: 223 DNA-ASVQLVLEDGSLFKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARL 281
           D A ASV+L+LEDG+ +   GRL+FS V V+E TG+VTLR L PNP+ TLLPGM++ A L
Sbjct: 258 DKAEASVKLLLEDGTTYAHAGRLQFSSVTVNEGTGAVTLRILVPNPERTLLPGMYMRAVL 317

Query: 282 KAGVNANAILAPQQGVTRDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGD 341
           + GV   A+L PQQGVTR   G  +ALVV  ENKVE R LK SR +G+ W + EGL  G+
Sbjct: 318 EQGVAEGALLVPQQGVTRTANGDASALVVTSENKVEKRALKVSRAVGNRWQVIEGLKAGE 377

Query: 342 RLITEGLQYVRPGVEVKVSDATNVKKPAGPDQANAAK 378
           R+I EG   V+ G  VK  DA      AG   +  A+
Sbjct: 378 RVIVEGSLKVKAGDTVKAVDAAGATTVAGAQASTTAR 414