Pairwise Alignments

Query, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

Subject, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  184 bits (466), Expect = 5e-51
 Identities = 134/403 (33%), Positives = 209/403 (51%), Gaps = 32/403 (7%)

Query: 5   PAVTALVSAVALATLLSGCKKEEA----APAA-QAPQVGVVTIQPQAFTLTSELPGRTSA 59
           PAVT L + +A+A  + G    +A     PAA QA  V V T+         E  GR  A
Sbjct: 18  PAVTGLTALLAVAAAVVGMYSFKAEANNTPAAPQATPVSVATVASSEINAWDEFSGRLEA 77

Query: 60  YRVAEVRPQVNGIILKRLFKEGSEVKEGQQLYQIDPAVY-------EATLANAKANLLAT 112
               +VR +V G +    F+EG+ VK+G  L  IDPA Y       EA +A+A+A    +
Sbjct: 78  VERVDVRSRVAGAVQAVHFREGALVKQGDLLVTIDPAPYAAEVERAEAQVASAQARQSFS 137

Query: 113 RSLAERYKQLIDEQAVSKQEYD-------DANAKRLQAEASLKSAQIDLRYTKVLAPISG 165
           RS  ER K+L D++A++++E+D       +A+A    A+ASL+SA+++L YT+V AP+SG
Sbjct: 138 RSEQERAKRLWDDKAIAQREFDERVNAGREADANLRAAQASLQSARLNLGYTQVRAPVSG 197

Query: 166 RIGRSSFTEGALVSNGQ-TDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKAGDN 224
           RIGR   T G LV+ G     + T+  + PIY         + +  +DL +G   +    
Sbjct: 198 RIGRIEVTVGNLVAAGPGAPVLTTLVSVSPIYASFDADEQVITRALKDLPTGSSARGQIE 257

Query: 225 AASVQLVLE--DGSLFKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLK 282
           +  VQ+     DG+ F   G+L+  +  VD  +G+V +RA F N D  L+PG F   R+ 
Sbjct: 258 SIPVQMGTAGLDGTPF--TGKLQLIDNQVDAKSGTVRVRASFDNKDGALIPGQFARIRMG 315

Query: 283 AGVNANAILAPQQGVTRDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDR 342
              + +A+L  ++ +  D +     +VV +++K   R++    ++    ++ +GL  GDR
Sbjct: 316 QARSDSALLVSERAIGTD-QNKKFVMVVGEDSKATYREVTLGASINGLRVVSKGLKAGDR 374

Query: 343 LITEGLQYVRPGVEVKVSDATNVKKPAGPDQ------ANAAKA 379
           +I  GLQ++RPG  V     T   K A P Q      A AAK+
Sbjct: 375 VIVNGLQHIRPGALVAPQQVTMDAK-ADPKQQQPERVAEAAKS 416