Pairwise Alignments

Query, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

Subject, 414 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  318 bits (815), Expect = 2e-91
 Identities = 189/396 (47%), Positives = 259/396 (65%), Gaps = 28/396 (7%)

Query: 6   AVTALVSAVALATLLSGCKKEEAAPAAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEV 65
           A+ AL +    +   SG  K  AAP  +   VG VT++ +    ++ELPGRT+A  +AE+
Sbjct: 17  AIAALAACSRTSVETSGTSKAAAAPGKE---VGTVTLKHETLAQSTELPGRTAAPVIAEI 73

Query: 66  RPQVNGIILKRLFKEGSEVKEGQQLYQIDPAVYEATLANAKANL------LAT-RSLAER 118
           RPQV GI+ +RLF EGS+VK GQ LYQ+DPA  +A  A+A+A++      LAT R++A R
Sbjct: 74  RPQVGGILKERLFTEGSQVKAGQVLYQLDPAPLQAAHASAQASVRKAESALATARTVARR 133

Query: 119 YKQLIDEQAVSKQEYDDANAKRLQAEASL-------KSAQIDLRYTKVLAPISGRIGRSS 171
             +L+   A+S+Q +D++ A   QAEA L       ++A+I L YT++ +PI+G    S+
Sbjct: 134 NAELVKIDAISRQVFDESQAAEQQAEADLGVARAAEQTARIQLGYTRITSPIAGWAELST 193

Query: 172 FTEGALVSNGQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKAGDNAASVQLV 231
            T GALV+  Q  A+ T+QQLDPI+V VTQS+ ELL+L+R+L SG+LQ+A D  A +QLV
Sbjct: 194 VTPGALVTANQAAALTTVQQLDPIHVHVTQSSRELLRLKRELASGRLQRASDAEARIQLV 253

Query: 232 LEDGSLFKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNANAIL 291
           LEDGS +   GRL FS V VD  TGSVTLRA+ PNPD  L+PGM+V A L+ G +A A+L
Sbjct: 254 LEDGSKYPHAGRLTFSGVTVDAGTGSVTLRAVVPNPDKLLMPGMYVRAVLQEGTDATALL 313

Query: 292 APQQGVTRDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYV 351
            PQQ VTR   G+ +ALVV+ ENKV  R ++  R +G+ W + EGL  GDR++TEG Q V
Sbjct: 314 VPQQAVTRAPDGSASALVVDAENKVAKRPIQVGRAVGTRWQVLEGLAAGDRVMTEGSQRV 373

Query: 352 RPGVEVKVSD----ATNVKKPAG------PDQANAA 377
           + G +VKV D    A N   P+G      PD A+AA
Sbjct: 374 KVGEKVKVVDLGAKAAN-GTPSGPVASAQPDAADAA 408