Pairwise Alignments

Query, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

Subject, 421 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  301 bits (772), Expect = 2e-86
 Identities = 184/405 (45%), Positives = 252/405 (62%), Gaps = 28/405 (6%)

Query: 3   FKPAVTALVSAVALATLLSGCKKEEAAPAA-------QAPQVGVVTIQPQAFTLTSELPG 55
           F P + A V+AVAL  +L+GC K +A   A        AP+VGVV   P    L +ELPG
Sbjct: 12  FSPRL-ATVAAVALL-VLAGCGKSDAPAGAGAPGGAHPAPEVGVVVAAPGDVGLVTELPG 69

Query: 56  RTSAYRVAEVRPQVNGIILKRLFKEGSEVKEGQQLYQIDPAVY-------EATLANAKAN 108
           R  A RVA+VR + +GI+LKR F+EGS+VK GQ L++IDPA         +ATLA A+AN
Sbjct: 70  RLEASRVAQVRARASGILLKREFREGSDVKAGQLLFRIDPAPLAAALQNAQATLARAEAN 129

Query: 109 LLATRSLAERYKQLIDEQAVSKQEYDDANAKRLQAEASLKS-------AQIDLRYTKVLA 161
            +  ++LA+RYK L++  AVSKQEY  A A +  AEA + S       A+I+L Y  V +
Sbjct: 130 AVQAKALADRYKPLVEANAVSKQEYATAVASQKTAEADVASGRAAVQTAKINLGYADVTS 189

Query: 162 PISGRIGRSSFTEGALVSNGQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKA 221
           PISGRIGR+  TEGALV  G+   +A +QQ++P+YV+ TQS  ++LKLRR L  GQ ++A
Sbjct: 190 PISGRIGRALVTEGALVGQGEATELAVVQQINPVYVNFTQSATDVLKLRRALADGQYKRA 249

Query: 222 G-DNAASVQLVLEDGSLFKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHAR 280
           G + AASV++VLEDGS +  EG+L FS++ VD TTG + LRA  PNP   LLPG++V  R
Sbjct: 250 GSEEAASVRVVLEDGSEYALEGKLLFSDLTVDSTTGQIMLRAEVPNPKGELLPGLYVRVR 309

Query: 281 LKAGVNANAILAPQQGVTRDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPG 340
           L+     NAI  PQQ VTR  +G  T  VV+++ K+  R +K S    + W++ +GL  G
Sbjct: 310 LEQAQATNAITLPQQAVTRTQQG-DTVTVVDKDGKLSKRNVKISAAKDNQWVVLDGLKAG 368

Query: 341 DRLITEG---LQYVRPGVEVKVSDATNVKKPAGPDQANAAKADAK 382
           ++++ +G   LQ + PG  VK    T     A    A AA A A+
Sbjct: 369 EQVMVDGFQKLQMMPPGTPVKAVPWTKPNPAAAAKPAAAAPAAAE 413