Pairwise Alignments

Query, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

Subject, 377 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

 Score =  321 bits (822), Expect = 2e-92
 Identities = 184/362 (50%), Positives = 245/362 (67%), Gaps = 18/362 (4%)

Query: 11  VSAVALATLLSGCKKEEAAPAAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVN 70
           V+ +AL  L++ C +E+A P     +VGVVT+  Q  T++SELP RT +   +EVRPQ+ 
Sbjct: 12  VAPIALCILITACGQEKA-PKKGPVEVGVVTLAAQNVTVSSELPARTVSTMQSEVRPQIT 70

Query: 71  GIILKRLFKEGSEVKEGQQLYQIDPAVY-------EATLANAKANLLATRSLAERYKQLI 123
           G+I KRLF EGS V  GQ LYQID  +Y       +A L +A+A  +A ++ A+RY+ L 
Sbjct: 71  GVIQKRLFTEGSMVTAGQPLYQIDERLYRASRDEAQAALVSAQATAVAAQAKAQRYRGLG 130

Query: 124 DEQAVSKQEYDD--ANAKRL-----QAEASLKSAQIDLRYTKVLAPISGRIGRSSFTEGA 176
           D +AVS Q+ DD  A A++      QA ASL +A ++L +T+V APISGRIGR+ FT GA
Sbjct: 131 DTEAVSAQDRDDVIATARQAAAAVGQARASLDTANVNLTFTQVRAPISGRIGRTLFTPGA 190

Query: 177 LVSNGQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKAGDNAASVQLVLEDGS 236
           LV+  QTD + TIQQLDPIYVDVTQS+++LL+LRR L +G+   A   +A+++L L+DG+
Sbjct: 191 LVTASQTDPLTTIQQLDPIYVDVTQSSSQLLQLRRSLAAGKTLPA---SATIRLKLDDGT 247

Query: 237 LFKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNANAILAPQQG 296
            +  EGR+EF+E  VD  +G+VTLRA FPNPD  LLPGMFV       V   AILAPQQG
Sbjct: 248 EYPLEGRIEFAEPIVDVDSGTVTLRARFPNPDGMLLPGMFVRVVAPQSVVPGAILAPQQG 307

Query: 297 VTRDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYVRPGVE 356
           + RD KG  TALVV ++NKVE R + A++ +G  WLI  GL  GDRLI EG   V+P  +
Sbjct: 308 IARDAKGNATALVVTKDNKVERRTVTAAQAIGDKWLITAGLKAGDRLIVEGTDKVQPDDK 367

Query: 357 VK 358
           VK
Sbjct: 368 VK 369