Pairwise Alignments

Query, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

Subject, 396 a.a., RND family efflux transporter, MFP subunit from Kangiella aquimarina DSM 16071

 Score =  247 bits (631), Expect = 4e-70
 Identities = 146/360 (40%), Positives = 218/360 (60%), Gaps = 23/360 (6%)

Query: 28  AAPAAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGIILKRLFKEGSEVKEG 87
           A    Q   V V T+     T T +LPGR +A R AEVR +V+GI+ KR+F EG  VK+G
Sbjct: 41  AEQGEQPVPVEVSTVSEGITTFTQDLPGRVNAIRTAEVRARVDGILEKRVFTEGDMVKQG 100

Query: 88  QQLYQIDPAVYEATLANAKANL---LATRSL----AERYKQLIDEQAVSKQEYDDANAKR 140
             L+QID    +A +   +ANL   +A + L     ERY  L++  AVS+QE+D   A+ 
Sbjct: 101 DVLFQIDKRQLQADVQAERANLNDAIAQQKLNQQTLERYTTLLELGAVSQQEFDTFAAQN 160

Query: 141 LQAEA-------SLKSAQIDLRYTKVLAPISGRIGRSSFTEGALVSNGQTDAMATIQQLD 193
            QA+A       +L++AQI L Y  V APISGRIGR+  TEGALV   ++  +ATI+QLD
Sbjct: 161 EQAKARVELAKSNLRNAQIQLEYATVTAPISGRIGRAMVTEGALVRAAESTHLATIEQLD 220

Query: 194 PIYVDVTQSTAELLKLRRDLESGQLQKAGDNAASVQLVLEDGSLFKQEGRLEFSEVAVDE 253
            +YVD T+S++E+++LR+  ESGQ   A  ++++VQ+   DG+ +   G LEFS  +V+ 
Sbjct: 221 KVYVDFTRSSSEMMQLRKLFESGQSSNA--SSSTVQIFYNDGTQYPGSGNLEFSSWSVEP 278

Query: 254 TTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNANAILAPQQGVTRDLKGAPTALVVNQE 313
            TGSV LRA+  NPDH LLPGMFV  +L  G + + +  PQ+ VT    GA   L+  ++
Sbjct: 279 DTGSVQLRAIVDNPDHLLLPGMFVRVKLPVGESDSLLQVPQKAVTMSANGATVKLI--KD 336

Query: 314 NKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYVRPGVEVKVSDATNVKKPAGPDQ 373
            K+ ++ ++    +G +W+++ GL  GD++I    Q+++PG  V     T + +P+G  Q
Sbjct: 337 GKLAVQPVELGPMVGPNWVVKSGLQRGDQVIVSNTQFLQPGTPV-----TAMNQPSGNAQ 391