Pairwise Alignments

Query, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

Subject, 404 a.a., RND multidrug efflux membrane permease from Agrobacterium fabrum C58

 Score =  306 bits (785), Expect = 5e-88
 Identities = 181/392 (46%), Positives = 247/392 (63%), Gaps = 21/392 (5%)

Query: 11  VSAVALATL-LSGCKKEEA-APAAQAP-QVGVVTIQPQAFTLTSELPGRTSAYRVAEVRP 67
           ++AV L  + L GC  E+A APAA  P  V VV ++P+   +T+ELPGR +  R+AEVRP
Sbjct: 8   IAAVLLTGIVLVGCSDEQASAPAAPPPGAVKVVAVKPEELPITNELPGRIAPTRLAEVRP 67

Query: 68  QVNGIILKRLFKEGSEVKEGQQLYQIDPAVY-------EATLANAKANLLATRSLAERYK 120
           +V+GII++R+F++GS VKEG  LY+ID A +       E TL  A+A  L  R  A+R +
Sbjct: 68  RVSGIIVERVFEQGSLVKEGDVLYRIDRAPFQVRVDSAEGTLRRAQAAQLQARQTADRQQ 127

Query: 121 QLIDEQAVSKQEYDDANAKRLQA-------EASLKSAQIDLRYTKVLAPISGRIGRSSFT 173
           QL      S+QE+D+A A   QA       EA +  A+++L+Y  V APISG IGR+  T
Sbjct: 128 QLRRSNVGSQQEFDNAIALLAQADAEVAVAEAGVAEARLNLQYADVKAPISGVIGRARIT 187

Query: 174 EGALVSNGQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKAGDNAASVQLVLE 233
           EGALVS   ++ +ATIQQLDPIY D TQ  A+L++LR+ L+ GQL   G N A V L+ +
Sbjct: 188 EGALVSATGSENLATIQQLDPIYADFTQPAADLIRLRKALQDGQLM-TGQNEAEVNLLFD 246

Query: 234 DGSLFKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNANAILAP 293
           DGS +   GRL FSE AVDETTG VTLR  FPNP+  LLPGM+V  +++ G+   A   P
Sbjct: 247 DGSRYPVSGRLLFSEAAVDETTGQVTLRGEFPNPNGDLLPGMYVRVQIQQGIQKAAFAVP 306

Query: 294 QQGVTRDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYVRP 353
           QQ V RD  G  + LVVN E+ VE R++   R++G  W+I EGL+ GDR++ EG Q   P
Sbjct: 307 QQAVQRDAGGQASVLVVNAEDTVEQRRVSVGRSIGDRWVISEGLDDGDRVVAEGFQKTAP 366

Query: 354 GVEVKV---SDATNVKKPAGPDQANAAKADAK 382
           G +VK    S   +V   AG + A  ++  ++
Sbjct: 367 GAKVKPEPWSQEPDVAAAAGSEGAAPSETSSE 398