Pairwise Alignments

Query, 1050 a.a., Probable efflux pump membrane transporter TtgB from Pseudomonas putida KT2440

Subject, 1082 a.a., multidrug efflux RND transporter permease subunit from Rhodanobacter sp000427505 FW510-R12

 Score =  988 bits (2553), Expect = 0.0
 Identities = 526/1065 (49%), Positives = 701/1065 (65%), Gaps = 38/1065 (3%)

Query: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60
            M  FFIDRPIFAWV+A++I L G LSIL L +  YPS+APP++ +   YPGASA T +  
Sbjct: 1    MPSFFIDRPIFAWVVAILIALGGVLSILNLGVESYPSVAPPSVVVNAVYPGASADTTEKN 60

Query: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120
            V QVIEQQL GID+L Y SS S+S G  +IT TFE GTNPD AQVQVQNK++LATP LP 
Sbjct: 61   VTQVIEQQLTGIDHLLYFSSSSSSSGRASITLTFENGTNPDIAQVQVQNKVSLATPRLPS 120

Query: 121  EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGA 180
            EV +QG+ V KA   FL V+ L S++ ++ +  L + + S + D I+R  GVG  Q FG 
Sbjct: 121  EVTKQGVVVAKANTGFLEVVALRSDNPAIDRARLNDIVASQVLDQIARVPGVGSTQQFGG 180

Query: 181  QYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTRL 240
            +YAMRIWLDP KL  + L+      AV AQNVQ ++G LG  PA  G  ++ T+  + R 
Sbjct: 181  EYAMRIWLDPDKLQGYGLSASQALAAVTAQNVQFAAGSLGSDPAANGQGISVTVATEGRF 240

Query: 241  QTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANAL 300
             T EQFE+I+L+ N DG+ V+LGDVA V  G   Y  +  +NG P +  A++L  GANAL
Sbjct: 241  TTPEQFENIILRANNDGTTVKLGDVAWVSFGAGVYGFNTTYNGLPVAAFAIQLLPGANAL 300

Query: 301  DTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQ 360
            D A A+   +  L   FP GV    PYD+T  V  S++ V+HTLIEA+VLVFLVM +FLQ
Sbjct: 301  DVATAVHGKMDELAGSFPQGVSWFTPYDSTTFVKVSVNEVVHTLIEAIVLVFLVMLIFLQ 360

Query: 361  NFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420
            N RATII T+ +PV LLGTF  +   GF+IN LT+F MVLAIG++VDDAIVV+ENVER+M
Sbjct: 361  NIRATIIPTLVIPVALLGTFIGMLLLGFTINQLTLFGMVLAIGIVVDDAIVVIENVERIM 420

Query: 421  SEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGL 480
            +E+GL PKEATK++M QI GA+VGI +VL AV +P +F  G+ GVIY+QF++TI  ++  
Sbjct: 421  TEDGLSPKEATKKAMGQITGAVVGITVVLIAVFVPSSFQPGAAGVIYKQFALTIAMSVAF 480

Query: 481  SVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGAILRNKVP 540
            S  +AL FTPALCA+ L P+    H   K   F WFN  F +  + Y   +G+ +R+   
Sbjct: 481  SAFLALSFTPALCASFLTPV----HEEKKNFVFRWFNTAFGKITHTYTGHIGSAVRHAPR 536

Query: 541  FLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLLK 600
            +++ + LI V   +L+ R+P +FLPEEDQG   A VQ P G+S +RT  V+ Q+   L +
Sbjct: 537  WVMVFVLISVLTGFLYTRLPGSFLPEEDQGFALAVVQLPPGASLQRTNAVMRQILTVLKQ 596

Query: 601  DEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDERS----------------KENSVF 644
            D A  V  V  + GF+F G G++ GM+FI LKPW ER                 KE    
Sbjct: 597  DPA--VDGVVQIAGFSFLGMGENVGMSFIRLKPWGERGWAPDQKAAQEQHDKLVKEGKAK 654

Query: 645  AL---------AQRAQQHFFTFRDAMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLM 695
             +          QRA     + RDA +F    P V  LG   GFD++LQDRGG G + L 
Sbjct: 655  PIDLGVTAAEFIQRANGAVQSVRDAQIFIVNVPTVQGLGQFGGFDMYLQDRGGTGRDALT 714

Query: 696  EARNQFLAKAAQSKILSAVRPNGLNDEPQYQLTIDDERASALGVTIADINNTLSIALGAS 755
             ARN  L  A+Q+ +L  VRPNGL D PQ +L +D  +A ++G+++ DI N +S+ L   
Sbjct: 715  AARNTLLGAASQNPLLVGVRPNGLEDAPQLRLDVDRTQALSMGLSVGDIYNAISLMLAPV 774

Query: 756  YVNDFIDRGRVKKVYIQGEPSARMSPEDLQKWYV------RNGAGEMVPFSSFAKGEWTY 809
            YVNDF   GRVK+V +Q +   RM PE  Q  +        +G  +M+P S+  + +W  
Sbjct: 775  YVNDFSYGGRVKRVIMQADSPHRMGPEAFQHIFTPSTRTNADGTPQMIPLSNVVQAKWQM 834

Query: 810  GSPKLSRYNGVEAMEILGAPAPGYSTGEAMAEVERIAGE-LPSGIGFSWTGMSYEEKLSG 868
             SP L RYNG  A+EI+G+PAPG+++GEAM  +++I  + LP G G+ WTG SY+E LSG
Sbjct: 835  ASPSLVRYNGYSAVEIVGSPAPGHASGEAMNIMQKIVSDDLPHGFGYDWTGQSYQEILSG 894

Query: 869  SQMPALFALSVLFVFLCLAALYESWSIPIAVVLVVPLGIIGALIATSLRGLSNDVYFLVG 928
            +    L  LSV+ VFLCL ALYESWSIP++V+LVVPLGI+GA++ T LRGL +D+YF +G
Sbjct: 895  NTAILLMVLSVVIVFLCLTALYESWSIPVSVLLVVPLGILGAVVFTLLRGLPDDIYFKIG 954

Query: 929  LLTTIGLAAKNAILIVEFAKELHEQGRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTI 988
            ++T +GLAAKNAILIVEFA     QGR+L +A ++A R+RLRPI+MTS+AFI GV PL +
Sbjct: 955  VITVMGLAAKNAILIVEFAVIEQRQGRTLREAVVDAARLRLRPILMTSIAFIGGVFPLFV 1014

Query: 989  ASGAGAGSQHAIGTGVIGGMISATVLAIFWVPLFFVAVSSLFGSK 1033
            ++GAGA ++HAIGTGVIGGM+ AT L +  +P+F+V V  L G K
Sbjct: 1015 STGAGANARHAIGTGVIGGMLFATFLGVLLIPVFYVVVRRLLGDK 1059