Pairwise Alignments

Query, 1050 a.a., Probable efflux pump membrane transporter TtgB from Pseudomonas putida KT2440

Subject, 1053 a.a., multidrug transporter from Pseudomonas simiae WCS417

 Score = 1673 bits (4332), Expect = 0.0
 Identities = 847/1057 (80%), Positives = 951/1057 (89%), Gaps = 11/1057 (1%)

Query: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60
            MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYP+IAP AI I VTYPGASAQTVQDT
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPAIAPTAIDIQVTYPGASAQTVQDT 60

Query: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120
            VVQVIEQQLNGIDNLRYVSS+SNSDGSMTIT TF QGTNPD AQVQVQNKLNLATPLLPQ
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSDSNSDGSMTITVTFNQGTNPDIAQVQVQNKLNLATPLLPQ 120

Query: 121  EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGA 180
            EVQQQGIRVTK+VKNFL+VIGLVSEDGSMTKDDL+NYIVSN+QDPISRTAGVGDFQVFG+
Sbjct: 121  EVQQQGIRVTKSVKNFLMVIGLVSEDGSMTKDDLSNYIVSNIQDPISRTAGVGDFQVFGS 180

Query: 181  QYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTRL 240
            QYAMRIWLDP+KLN +QLTPVDV TA++AQNVQV++GQLGGLPALPGTQLNATIIGKTRL
Sbjct: 181  QYAMRIWLDPSKLNNYQLTPVDVSTAISAQNVQVATGQLGGLPALPGTQLNATIIGKTRL 240

Query: 241  QTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANAL 300
            QTAEQF +IL+KVN DGSQVRL DVA++ LGG+NY+++AQFNGKPASG+A+KLA+GANAL
Sbjct: 241  QTAEQFGNILMKVNTDGSQVRLKDVARIELGGQNYSIAAQFNGKPASGMAIKLASGANAL 300

Query: 301  DTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQ 360
            DT KA+R T+  LEPFFPPG+KAV PYDTTPVVTESISGV+HTL+EA+VLVFLVM+LFLQ
Sbjct: 301  DTGKAIRATVAQLEPFFPPGMKAVVPYDTTPVVTESISGVVHTLVEAIVLVFLVMFLFLQ 360

Query: 361  NFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420
            NFRATIITTMTVPVVLLGTFGILAA GF+INTLTMF M+LAIGLLVDDAIVVVENVERVM
Sbjct: 361  NFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMILAIGLLVDDAIVVVENVERVM 420

Query: 421  SEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGL 480
            +EE L PKEAT +SM QIQGALVGIALVLSAVLLPMAFFGGSTGVIY+QFSITIVSAM L
Sbjct: 421  AEEHLSPKEATVKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMAL 480

Query: 481  SVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGAILRNKVP 540
            SVLVALIFTPALCATMLKP+   +H   K GFFGWFNR FDR V  YER VG ++++K+P
Sbjct: 481  SVLVALIFTPALCATMLKPIDPEKHGQPKRGFFGWFNRTFDRGVLSYERGVGNMIKHKIP 540

Query: 541  FLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLLK 600
              L YAL++ GMIWLF RIP AFLP+EDQGV+FAQVQTP GS+AERTQ V+D MR +LL 
Sbjct: 541  AFLVYALVIAGMIWLFMRIPAAFLPDEDQGVIFAQVQTPVGSTAERTQKVIDDMRIFLLN 600

Query: 601  D------EADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDERSKENSVFALAQRAQQHF 654
            D      E   V SVFTVNGFNFAGRGQSSG+AF+MLKPWDER    SVF +A+RAQ +F
Sbjct: 601  DKEGEPGEGKGVKSVFTVNGFNFAGRGQSSGLAFVMLKPWDERDASTSVFEIAKRAQGYF 660

Query: 655  F-TFRDAMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQFLAKAAQSKILSA 713
              TF+DAMVFA  PP+VLELGNATGFDVFLQD+GGVGH+KLM ARNQFL  AAQSKIL+ 
Sbjct: 661  MQTFKDAMVFAIVPPSVLELGNATGFDVFLQDQGGVGHDKLMAARNQFLGMAAQSKILAG 720

Query: 714  VRPNGLNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQG 773
            VRPNG+NDEPQY+LT+DDE+ASA G+T++ IN TL+IALG SYVNDFIDRGRVKKVY+QG
Sbjct: 721  VRPNGVNDEPQYELTVDDEKASAQGITLSSINQTLAIALGGSYVNDFIDRGRVKKVYVQG 780

Query: 774  EPSARMSPEDLQKWYVRNGAGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGY 833
            E ++RMSPEDL KWYVR+ +G+MVP S+ A G+W +GSPKLSRYNGV AMEILG PAPGY
Sbjct: 781  EAASRMSPEDLNKWYVRSDSGKMVPLSAIASGKWIFGSPKLSRYNGVAAMEILGTPAPGY 840

Query: 834  STGEAMAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESW 893
            STG+AMAEVERIA +LP+GIG++WTG+SYEE+LSGSQ PAL+ALS+L VFLCLAALYESW
Sbjct: 841  STGDAMAEVERIAKQLPAGIGYAWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESW 900

Query: 894  SIPIAVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHEQ 953
            SIPIAV+LVVPLG++GALIATS+RGLSNDV+F VGLL T+GLAAKNAILIVEFAKELHEQ
Sbjct: 901  SIPIAVILVVPLGVVGALIATSMRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHEQ 960

Query: 954  GRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISATV 1013
            G+ + +AAIEA RMRLRPIIMTS+AFILGV+PL I+SGAG+GSQHAIGTGVIGGMI+ATV
Sbjct: 961  GKGIVEAAIEASRMRLRPIIMTSMAFILGVLPLAISSGAGSGSQHAIGTGVIGGMITATV 1020

Query: 1014 LAIFWVPLFFVAVSSLFGSKEPEKDVTPENPRYEAGQ 1050
            LAIFWVPLFF  VS+   + E +K  T E P+ EAGQ
Sbjct: 1021 LAIFWVPLFFATVSA---AGERKKTDTTETPK-EAGQ 1053