Pairwise Alignments

Query, 1050 a.a., Probable efflux pump membrane transporter TtgB from Pseudomonas putida KT2440

Subject, 1045 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score = 1174 bits (3037), Expect = 0.0
 Identities = 602/1037 (58%), Positives = 773/1037 (74%), Gaps = 9/1037 (0%)

Query: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60
            M++FFIDRPIFAWVIA+VIML GALSI  LP+ QYP IAP  ++I  TY GASA+T++D+
Sbjct: 1    MARFFIDRPIFAWVIAIVIMLAGALSIGTLPLEQYPDIAPTKVSINATYTGASAKTIEDS 60

Query: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120
            V QVIEQ++ G+D L  +SS S S G+  I  TFE GTN D AQ+QVQNKL  A   LPQ
Sbjct: 61   VTQVIEQKMKGLDRLVSMSSSSTSSGTARIELTFEAGTNADVAQMQVQNKLQQAQSQLPQ 120

Query: 121  EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGA 180
             VQ QG+ VTK+  +FL+++ L+S+DGS T  D+ +YI S++ D ISR  GVGD Q  G+
Sbjct: 121  SVQSQGVTVTKSGTDFLMIVSLISQDGSATATDIGDYISSSLLDVISRIDGVGDVQTLGS 180

Query: 181  QYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTRL 240
             YAMRIWLDPAKL K+ L P DV +A+ +QN +VS+GQLG LPA  G +L ATI  +++L
Sbjct: 181  GYAMRIWLDPAKLQKYSLMPSDVSSALTSQNTEVSAGQLGALPATAGQRLTATITARSKL 240

Query: 241  QTAEQFESILLKVNKD-GSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANA 299
            +TA+QF  +++K +   G+ VRLGDVA++ LG E+Y +++ F+G P++G+ VKLATGANA
Sbjct: 241  RTADQFREVIVKSDSSSGAIVRLGDVARIELGSESYTINSHFDGHPSAGMGVKLATGANA 300

Query: 300  LDTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFL 359
            L  + A++  +  L PFFP  +KAV  YDTTP V  SI  V  TL EA+VLV L+MYLFL
Sbjct: 301  LTVSNAVKAKLAELSPFFPNQMKAVVGYDTTPFVRISIEEVAKTLAEAMVLVVLIMYLFL 360

Query: 360  QNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERV 419
            QN RAT++  + VPVVLLGTFG+L+  G+SINTLTMF MVLAIGLLVDDAIVVVENVER+
Sbjct: 361  QNLRATLVPAIAVPVVLLGTFGVLSLLGYSINTLTMFGMVLAIGLLVDDAIVVVENVERL 420

Query: 420  MSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMG 479
            M+EEGL PKEAT++SM +I GALVGIALVLSAV +PMAFFGGSTGVIYRQFS+TIV+AM 
Sbjct: 421  MTEEGLSPKEATRKSMSEITGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSVTIVAAML 480

Query: 480  LSVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGAILRNKV 539
            LSVLVAL  +PALCAT+LKP++ G HH  K GFFGWFNR F+R+   Y   VG +L    
Sbjct: 481  LSVLVALTLSPALCATLLKPVQAG-HHEEKRGFFGWFNRTFERNAERYRSGVGGLLHRGK 539

Query: 540  PFLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLL 599
              LL YAL+V  +   F R+PT+FLP+EDQG L AQV+ PA ++ E+ Q  +    +YL 
Sbjct: 540  RSLLVYALLVGVLGMTFMRLPTSFLPDEDQGTLMAQVKLPASATDEQLQQTMKSFEQYLS 599

Query: 600  KDEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDERS-KENSVFALAQRAQQHFFT-F 657
              +   VS   T+ G +     Q++G AFI LK W ER  K     +LA+R      T  
Sbjct: 600  SQKE--VSHYITLTGLS---GDQATGNAFITLKDWRERGGKAQDAASLARRFTMDMATRA 654

Query: 658  RDAMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQFLAKAAQSKILSAVRPN 717
             +A VF   PPAV  LG+  GFDV LQD GG+GHE L++AR QFLA A +   LS VR N
Sbjct: 655  SNANVFVMLPPAVRGLGSNAGFDVQLQDLGGIGHEALVQAREQFLALARKDPALSQVRSN 714

Query: 718  GLNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPSA 777
             L+D PQ+ + IDD +A+AL ++ +DIN+TLS A+G SYVNDFI+ GRVKKVY+Q +   
Sbjct: 715  NLDDTPQFSIDIDDRKAAALNLSTSDINDTLSSAMGGSYVNDFINNGRVKKVYVQADAPF 774

Query: 778  RMSPEDLQKWYVRNGAGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGE 837
            RM P+ + +W+VRN   EMVPFS+FA   WTYGSP+LSRYNG+ + E++G PA G S+G 
Sbjct: 775  RMQPDSVDRWHVRNANSEMVPFSAFASSRWTYGSPQLSRYNGMSSFELIGDPAAGVSSGT 834

Query: 838  AMAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIPI 897
            AM  VERI  +LP GIG+ W G SY+E+LSGSQ P L+A+S+LFVFLCLAALYESWS+P 
Sbjct: 835  AMDAVERIMKQLPQGIGYEWAGSSYQERLSGSQAPLLYAVSILFVFLCLAALYESWSVPF 894

Query: 898  AVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHEQGRSL 957
            +V+LVVPLG++GA++AT L GLSNDVYF VGLL T+GL+AKNAILIVEFAK+L ++G +L
Sbjct: 895  SVMLVVPLGVLGAVLATKLAGLSNDVYFQVGLLATVGLSAKNAILIVEFAKQLQDEGMAL 954

Query: 958  YDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISATVLAIF 1017
             +A ++A R+RLRPI+MTSLAF+ GV+PL +++GAG+GS+ AIG GV+GG+ +ATVL IF
Sbjct: 955  VEATLQAVRLRLRPILMTSLAFMFGVLPLALSTGAGSGSRRAIGVGVLGGIATATVLGIF 1014

Query: 1018 WVPLFFVAVSSLFGSKE 1034
            +VPLFFVA+   F  ++
Sbjct: 1015 FVPLFFVAIRRFFAQRK 1031