Pairwise Alignments

Query, 1050 a.a., Probable efflux pump membrane transporter TtgB from Pseudomonas putida KT2440

Subject, 1054 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score = 1111 bits (2874), Expect = 0.0
 Identities = 564/1039 (54%), Positives = 748/1039 (71%), Gaps = 4/1039 (0%)

Query: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60
            M+KFFIDRPIFAWVIAL I++VG ++I +LPI+QYP +APPAI I V YPGASAQT++D+
Sbjct: 1    MAKFFIDRPIFAWVIALFILVVGGVAITQLPISQYPPVAPPAIVINVAYPGASAQTLEDS 60

Query: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120
            V+ VIE+++NG   L Y+ S + +DG+ +IT +FE GTN D AQV VQN+L+ ATP LP 
Sbjct: 61   VLSVIEREMNGSPGLIYMESVAQADGTGSITISFEAGTNDDLAQVDVQNRLSRATPRLPA 120

Query: 121  EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGA 180
             V QQG+RV K+  NFL+ + L S++ +     L +Y   N+   + R  GVG  Q+FG+
Sbjct: 121  AVTQQGVRVDKSRNNFLMFVMLSSDNPNFDPVALGDYAARNVVPELQRVVGVGQAQLFGS 180

Query: 181  QYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTRL 240
            + AMRIW+DPAKL  + L+  DV  A+ AQN QVSSG +G LP +PG  + AT++   +L
Sbjct: 181  ENAMRIWIDPAKLQGYNLSATDVNNAIRAQNAQVSSGTIGDLPNIPGQAIAATVVVNGQL 240

Query: 241  QTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANAL 300
               +QF+ I+L+ N DGS VRL DVA+V LGG++YA SA+ NG PA G+ V+     NAL
Sbjct: 241  ANVDQFKDIVLRANTDGSTVRLKDVARVELGGQSYATSARLNGVPAVGVGVQPTPNGNAL 300

Query: 301  DTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQ 360
             +AKA+R  +  LE +FP GVK   PYD++  V  SI+ V+ TL+EAV LVF+VM+LFLQ
Sbjct: 301  QSAKAIRAKMAELERYFPQGVKWAIPYDSSRFVQISITEVVKTLLEAVALVFVVMFLFLQ 360

Query: 361  NFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420
            N+R TII T+ VP+ LLGTF  L A GFSIN LTMF MVL IG++VDDAIVVVENVER+M
Sbjct: 361  NWRYTIIPTIVVPIALLGTFASLLALGFSINVLTMFGMVLVIGIVVDDAIVVVENVERIM 420

Query: 421  SEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGL 480
            SEEGL P EAT+++M QI GA++G+ +VL +V +P+AFF GSTG IYRQFS  +V+++G 
Sbjct: 421  SEEGLSPLEATRKAMRQISGAIIGVTVVLVSVFVPLAFFAGSTGNIYRQFSAVMVASIGF 480

Query: 481  SVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGAILRNKVP 540
            S  +AL  TPALCAT+LKP++ G HH  K GFFGWFNR F R+  GYE  V  +LR    
Sbjct: 481  SAFMALSLTPALCATLLKPVEAGHHH-EKRGFFGWFNRGFSRTAKGYESLVARVLRRAAR 539

Query: 541  FLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLLK 600
            +L+ Y  I+  +++ + R+P++FLP+EDQG +   VQ P G++ ER   V+ Q+  ++LK
Sbjct: 540  YLVIYVAIIGAVVFTYTRLPSSFLPQEDQGNIIVNVQLPPGATQERALSVMQQVEGFILK 599

Query: 601  DEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDER-SKENSVFALAQRAQQHFFTFRD 659
                 V S+  V GF+F+G+GQ++G+AF+ LK WDER    +S  ALA RA       RD
Sbjct: 600  Q--PEVQSMVGVMGFSFSGQGQNAGLAFVTLKDWDERKDPAHSASALAGRAFGALSGIRD 657

Query: 660  AMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQFLAKAAQSKILSAVRPNGL 719
            A ++  +PP + ELGNA+GF   LQDR G GHE L+ ARNQ L  A+QSKILS VRP+GL
Sbjct: 658  AFIYPLSPPPIPELGNASGFSFRLQDRSGAGHEALINARNQLLGMASQSKILSQVRPDGL 717

Query: 720  NDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPSARM 779
             D PQ Q+ ID ++A+ALGV+   IN TLS ALG+SY+NDF +RGR+++V +Q +  ARM
Sbjct: 718  EDAPQLQIDIDRDKANALGVSFDAINATLSTALGSSYINDFPNRGRLQRVVVQADAPARM 777

Query: 780  SPEDLQKWYVRNGAGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGEAM 839
             P+DL K    N  G  VP S+FA  +W  G+ +  RYNG  A+ I G  A GYSTG AM
Sbjct: 778  QPDDLLKLNASNTQGLPVPLSAFATTKWVTGATQTVRYNGYPAIRISGDAAAGYSTGAAM 837

Query: 840  AEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIPIAV 899
            AE+E++A +LP G GF WTG S EEKL+GSQ   L+  ++L VFLCLAALYESWSIP++V
Sbjct: 838  AEMEKLASQLPQGFGFEWTGQSREEKLAGSQAIVLYGFAILAVFLCLAALYESWSIPLSV 897

Query: 900  VLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHEQGRSLYD 959
            +LVVPLG++G L+AT LR  SNDVYF VGL+T IGL+AKNAILI+EFAK+L  QG+ + +
Sbjct: 898  ILVVPLGVLGVLLATMLRAYSNDVYFQVGLITIIGLSAKNAILIIEFAKDLQAQGKGVIE 957

Query: 960  AAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISATVLAIFWV 1019
            +A+ A  +R RPI+MTSLAF LGV+PL +ASGAG+ SQ AIGTGV+GGM++ T LA+ +V
Sbjct: 958  SALAAAHLRFRPIVMTSLAFGLGVLPLVLASGAGSASQRAIGTGVLGGMVTGTALAVIFV 1017

Query: 1020 PLFFVAVSSLFGSKEPEKD 1038
            P+FFV V SLF     +++
Sbjct: 1018 PVFFVVVRSLFKGSARQRE 1036