Pairwise Alignments

Query, 1050 a.a., Probable efflux pump membrane transporter TtgB from Pseudomonas putida KT2440

Subject, 1049 a.a., multidrug efflux RND transporter permease subunit from Dickeya dianthicola ME23

 Score = 1313 bits (3397), Expect = 0.0
 Identities = 668/1041 (64%), Positives = 823/1041 (79%), Gaps = 6/1041 (0%)

Query: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60
            M+KFFIDRPIFAWVIA+++ML G L+ILKLPI QYP+IAPPA+ I   YPGA A+T+QDT
Sbjct: 1    MAKFFIDRPIFAWVIAIMVMLTGTLAILKLPIAQYPTIAPPAVQITANYPGADAKTLQDT 60

Query: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120
            V QVIEQ +NGID L Y+SS S+S G++ IT TF+   NPD AQVQVQNKL LA PLLPQ
Sbjct: 61   VTQVIEQNMNGIDKLLYMSSNSDSSGTVQITLTFDADANPDIAQVQVQNKLQLAMPLLPQ 120

Query: 121  EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGA 180
            EVQQQG+ V K+  +FL+V+G VS+D +MT  D+A+++ ++++DPISR  GVGD Q+FGA
Sbjct: 121  EVQQQGVSVQKSSSSFLMVLGFVSDDNNMTPQDIADFVGASIKDPISRVRGVGDTQLFGA 180

Query: 181  QYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTRL 240
            QYAMRIWLDP KLN +QLT  DV +A+  QN Q+++GQLGG P +PG +LNA+II +TRL
Sbjct: 181  QYAMRIWLDPDKLNNYQLTTSDVVSAIQVQNNQIAAGQLGGTPPVPGQKLNASIIAQTRL 240

Query: 241  QTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANAL 300
             + EQF +ILLKVN+DGSQVRL +VA + LGGE+Y V A++NG+PA+GL +KLATGANAL
Sbjct: 241  NSPEQFGNILLKVNQDGSQVRLNNVAHIELGGESYNVIARYNGRPAAGLGIKLATGANAL 300

Query: 301  DTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQ 360
            DTA A++E I  L+P FP G+K V+PYDTTP V  SI  V+ TL+EA+VLVF+VMYLFLQ
Sbjct: 301  DTASAVKEEITKLQPTFPAGLKVVYPYDTTPFVKISIHEVVKTLLEAIVLVFVVMYLFLQ 360

Query: 361  NFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420
            NFRAT+I T+ VPVVLLGTF IL+A G+SINTLTMFAMVLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  SEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGL 480
            +EEGL PKEAT++SM QIQGALVGIALVLSAV +PMAF  GSTG IYRQFS+TIVS+M L
Sbjct: 421  AEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIPMAFSSGSTGAIYRQFSVTIVSSMVL 480

Query: 481  SVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGAILRNKVP 540
            SVLVALI TPALCAT+LKP+    +H  K GFFGWFNR FD+S   Y  SV  ILR+   
Sbjct: 481  SVLVALILTPALCATILKPI---TNHGEKKGFFGWFNRLFDKSTRHYTNSVANILRSTGR 537

Query: 541  FLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLLK 600
            +++ Y L+V G+  +  R+P++FLP+EDQGVL   +Q P G++ E TQ V+ Q+ +Y L 
Sbjct: 538  YVVVYLLVVAGLGLMVTRLPSSFLPQEDQGVLLTMIQLPVGATQESTQKVLAQVNDYYLN 597

Query: 601  DEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDERS-KENSVFALAQRAQQHFFTFRD 659
             E D V SVFTVNGF FAGRGQ+ G+AF  LK WDERS   N V A+  RA   F   ++
Sbjct: 598  SEKDNVKSVFTVNGFGFAGRGQNMGIAFASLKDWDERSGAANKVDAIIGRAFGAFSQIKE 657

Query: 660  AMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQFLAKAAQ-SKILSAVRPNG 718
            AMV  F  PA++ELG A+GFD  L D+  +GH+KL+ ARNQ L   AQ    L  VRPNG
Sbjct: 658  AMVIPFNLPAIIELGTASGFDFELIDQNNLGHDKLIAARNQLLGMIAQHPDTLVRVRPNG 717

Query: 719  LNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPSAR 778
            + D PQY+L ID E+A +LGV+I+ IN TLS ALG +YVNDFIDRGRVKKVY+Q E   R
Sbjct: 718  MEDMPQYRLEIDQEKAESLGVSISTINATLSTALGGTYVNDFIDRGRVKKVYVQAEAKFR 777

Query: 779  MSPEDLQKWYVRNGAGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGEA 838
            M P D+QKWYVR  +G+MVPFS+FA   W YGSP+L RYNG+ ++E++G  APG STGEA
Sbjct: 778  MLPNDIQKWYVRGTSGQMVPFSAFASSHWEYGSPRLERYNGLPSVELVGEAAPGKSTGEA 837

Query: 839  MAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIPIA 898
            MA +E +A +LP GIGF WTGMSY+E+L+G+Q PAL  +S + VFLCLAALYESWSIP +
Sbjct: 838  MALMEELATQLPPGIGFDWTGMSYQERLAGNQAPALIIISAIVVFLCLAALYESWSIPFS 897

Query: 899  VVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHE-QGRSL 957
            V+LVVPLG+ GA++A SLRGL NDVYF VGLLTTIGL+AKNAILIVEFAK+L E +G+ L
Sbjct: 898  VMLVVPLGVFGAVMAASLRGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGL 957

Query: 958  YDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISATVLAIF 1017
             +A ++A RMRLRPI+MTSLAFILGV PL I+SGAG+G+Q+A+GTGV+GGMI+ATVLAI+
Sbjct: 958  VEATLDAVRMRLRPILMTSLAFILGVAPLVISSGAGSGAQNAVGTGVMGGMITATVLAIY 1017

Query: 1018 WVPLFFVAVSSLFGSKEPEKD 1038
            +VP+FFV V   F  K+   D
Sbjct: 1018 FVPVFFVVVRRRFSKKKEADD 1038