Pairwise Alignments

Query, 484 a.a., Probable efflux pump outer membrane protein TtgC from Pseudomonas putida KT2440

Subject, 472 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  206 bits (525), Expect = 1e-57
 Identities = 146/464 (31%), Positives = 226/464 (48%), Gaps = 9/464 (1%)

Query: 9   AVTAFILGGCSLIPDYQTPEAPVAA----QWPQGPAYSPTQSADVAAAEQGWRQFFHDPA 64
           A+    L GCS+ P YQ P   + A    Q   GP +S  Q +D  A E  W   ++D  
Sbjct: 10  ALMLLALQGCSMAPTYQVPAVDLPAGYREQTSDGPWHS-AQPSDQLAPE--WWTLYNDSR 66

Query: 65  LQQLIQTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGSGSRQRVPANMSQTGE 124
           L  L Q  L  N DL  A  + DA +A      A LFP +SA+    RQR   +    G+
Sbjct: 67  LNDLQQQLLKANPDLAAALAHFDASQAYASQLHAGLFPQISASAQPLRQRQSDSRPLRGD 126

Query: 125 SGITSQYSATLGVS-AYELDLFGRVRSLTEQALETYLSSEQARRSTQIALVASVANAYYT 183
           +  +   S T G S +Y+LDL+G++R+          +S       +++L   +A  Y  
Sbjct: 127 TQPSVYNSNTAGFSLSYDLDLWGKIRNQVAAGDAQAQASGDDLAVARLSLQHQLATLYVQ 186

Query: 184 WQADQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKYSQYQRLV 243
                A  ++ + +L  + ++  LTR   E  +AS LD+++A+  +  A+ ++ + +   
Sbjct: 187 LNGLDAQARILDRSLDDFRQALQLTRSRYEGKIASELDLTRAQNQLAEAKAQWDEIRGQR 246

Query: 244 AQDVNSLTVLLGTGIPADLAKPLELDADQLAEVPAGLPSDILQRRPDIQEAEHLLKAANA 303
               +++  L+G    +D +         L  +P+ LPS +LQRRPDI  AE  + AANA
Sbjct: 247 NLTEHAIGELVGVAA-SDFSLSPSPQLISLPGIPSQLPSHLLQRRPDIAAAERRVFAANA 305

Query: 304 NIGAARAAFFPSISLTANAGSLSPDMGHLFSGGQGTWLFQPQINLPIFNAGSLKASLDYS 363
           NIG A+AA++P  SLT   G  +  +G+L S G   W   P +NLPIF+ G L A+   +
Sbjct: 306 NIGVAKAAWYPDFSLTGLIGGQTQGVGNLLSAGNRYWALGPLVNLPIFDGGRLSANERQA 365

Query: 364 KIQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQANQDYYRLAERRYRIG 423
           K + +   A Y   +  A +EV D LA  +  +++ Q ++    A Q    LA   Y+ G
Sbjct: 366 KAEFEEASAHYRSQVLKAVREVEDNLAQLRDLQQEAQDEQAAADAAQHTQSLAMNSYQAG 425

Query: 424 IDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALGGGWY 467
             S L  + AQ     AQ+ L   +  QL + V L  ALGGGW+
Sbjct: 426 AVSYLDVVTAQTAALQAQRTLQAVQTRQLQASVGLVTALGGGWH 469