Pairwise Alignments

Query, 484 a.a., Probable efflux pump outer membrane protein TtgC from Pseudomonas putida KT2440

Subject, 494 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

 Score =  313 bits (803), Expect = 7e-90
 Identities = 186/461 (40%), Positives = 268/461 (58%), Gaps = 8/461 (1%)

Query: 7   SLAVTAFILGGCSLIPDYQTPEAPVAAQWPQGPAYSPTQSADVAAAEQGWRQFFHDPALQ 66
           +L V A + G  SL P       PVA+ W       P      AAA+  WR +F DPALQ
Sbjct: 33  TLVVLAVLSGCASLAPALDPIALPVASNWRT----QPDTPGVAAAADLAWRAYFTDPALQ 88

Query: 67  QLIQTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGSGSRQRVPANMSQTGESG 126
            LI+T+L NNRDLRVA L  +   A +RIQRA   P V       R  +P  +       
Sbjct: 89  ALIETALENNRDLRVALLRTEEASAAFRIQRAQQAPMVGVGVQQIRAGLPDGLQPLAGRS 148

Query: 127 ITSQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIALVASVANAYYTWQA 186
           +    +A++G+S++ELDL+GRVRS+   A E +L++ Q  R+ ++AL+A VA+AY   + 
Sbjct: 149 VLEVNAASVGISSWELDLWGRVRSMKTAAFEQWLATGQGHRAVELALIAQVADAYLGLRE 208

Query: 187 DQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKYSQYQRLVAQD 246
                 L   T++  +    + ++  E+G  S L+++Q RT +   +    Q +    Q 
Sbjct: 209 LDERIALARRTVENQQSLAQIFQKRFELGHGSRLELTQVRTLLSQGKALQVQLELQREQQ 268

Query: 247 VNSLTVLLGTG--IPADLAKPLELDADQLAEVPAGLPSDILQRRPDIQEAEHLLKAANAN 304
            N+L +LLG+   +P   A P++ +A  + E+  GLPSD+L  RPDI  AEH L+A  AN
Sbjct: 269 RNALALLLGSEPQLPPPSA-PMD-EALVMPELVHGLPSDLLLNRPDILAAEHALRARQAN 326

Query: 305 IGAARAAFFPSISLTANAGSLSPDMGHLFSGGQGTWLFQPQINLPIFNAGSLKASLDYSK 364
           IGAARAAFFP I+LT  AG++S  +  LFS G   WLFQP I LPIF+AG  +A+LD S 
Sbjct: 327 IGAARAAFFPRIALTGGAGTVSTSLSDLFSSGTRAWLFQPTIELPIFDAGMRQANLDVSV 386

Query: 365 IQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQANQDYYRLAERRYRIGI 424
           +++DI +A+YE+ IQ AF++VSD LAAR+   EQL   R    A  +  +LA   +  G 
Sbjct: 387 VRRDIAIAEYERAIQAAFRDVSDALAARQKLAEQLAVARQAHAAQTERLKLARMLFDAGS 446

Query: 425 DSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALGGG 465
            ++L  LDA+R+L +  Q L+  R + L+S++ LY ALGGG
Sbjct: 447 AAHLEVLDAERDLLAVAQQLVQVRKAALSSQIGLYAALGGG 487