Pairwise Alignments

Query, 484 a.a., Probable efflux pump outer membrane protein TtgC from Pseudomonas putida KT2440

Subject, 494 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

 Score =  216 bits (550), Expect = 1e-60
 Identities = 140/461 (30%), Positives = 227/461 (49%), Gaps = 6/461 (1%)

Query: 10  VTAFILGGCSLIPDYQTPEAPVAAQWPQGPAYSPTQSADVAAAEQGWRQFFHDPALQQLI 69
           + A ++ GC++ PDY+TP+ P+   W     +  +   D A     WR+F  DP L  L 
Sbjct: 13  LAAMLVAGCAVGPDYKTPDTPLPVSWKLEEPWRVSAPNDAADKGPWWRRF-GDPQLDALQ 71

Query: 70  QTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGSGSRQRVPANMSQTG---ESG 126
           Q +L  +  L +A   L   RA      A  +P V      SR R+ AN   T     + 
Sbjct: 72  QQALAGSPTLAIANARLAQARATLAANAAGQYPQVGLGTRASRLRISANRPLTNYATPNS 131

Query: 127 ITSQYSATLGVSA-YELDLFGRVRSLTEQALETYLSSEQARRSTQIALVASVANAYYTWQ 185
            T Q    L ++A YE+DL GRV+   E A  +   S    ++T++ L A VA++Y+  +
Sbjct: 132 TTVQNDFALSLNASYEVDLAGRVQRTVEGAKASAEQSAADLQNTRLLLSADVASSYFNLR 191

Query: 186 ADQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKYSQYQRLVAQ 245
           +      +   ++     +  L    +++G  S LDV+Q ++ +E    +    ++  +Q
Sbjct: 192 STDIELDVVTRSIALQRRALELVTARHDLGAVSGLDVAQQQSLLETTLTQVDVLRKQRSQ 251

Query: 246 DVNSLTVLLGTGIPADLAKPLELDADQLAEVPAGLPSDILQRRPDIQEAEHLLKAANANI 305
             ++L  L GT  P+  + P++L   +   VP G+PS+ILQRRPD+  AE  + AANA I
Sbjct: 252 YEHALATLTGTPAPS-FSLPVDLREIRPPAVPLGVPSEILQRRPDVASAERAMAAANAQI 310

Query: 306 GAARAAFFPSISLTANAGSLSPDMGHLFSGGQGTWLFQPQINLPIFNAGSLKASLDYSKI 365
           G A AAF+PSI ++   G  S  +  LF+G    W         +F+ G ++A++D++K 
Sbjct: 311 GVATAAFYPSIFISPTVGVDSRTIETLFNGPSLLWSVGVSATQVLFDGGRIRANVDFAKA 370

Query: 366 QKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQANQDYYRLAERRYRIGID 425
             D+ V  Y +T+ TA QEV DG+      +      +  V A +    +A  RY  G  
Sbjct: 371 GYDVTVGNYRRTVLTAMQEVEDGITGLSALDSATAQAQAAVTAARRVLDMATSRYEGGAS 430

Query: 426 SNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALGGGW 466
           + L  + AQ++L + ++     R  +L + V L KALGG W
Sbjct: 431 TYLDVITAQQSLLTVERQAAQLRGQRLLTAVFLVKALGGDW 471