Pairwise Alignments

Query, 418 a.a., porin-like protein from Pseudomonas putida KT2440

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  288 bits (737), Expect = 2e-82
 Identities = 175/426 (41%), Positives = 247/426 (57%), Gaps = 20/426 (4%)

Query: 6   PARQLLPGLLAMSCALPAFAANEGGFIEDAKATLNLRNFYINRNFVD--PAHPQG--KAE 61
           P R++  GL  +   + A AA   GF+EDA A +  RN Y NR+F D   +  QG  K E
Sbjct: 13  PGRRVT-GLFLLCAGVNAQAA---GFLEDASAKIEARNVYFNRDFRDGYSSSSQGASKRE 68

Query: 62  EWTQSFILDARSGFTQGTVGFGVDVLGLYSVKLDGGKGTTNTHLLPV--HGDGRPADDFG 119
           EW Q FIL+ +SG+TQG VG GVD LG++  KLD     +N+ LLP   H   R AD + 
Sbjct: 69  EWAQGFILNVQSGYTQGPVGVGVDALGMFGFKLDSSPADSNSGLLPSSGHDPRRSADQYA 128

Query: 120 RLGVALKAKLSETELKVGEWMPVLPILRSDDGRSLPQTFRGGQLTSREIAGLTLYAGQFR 179
           ++G+A K K+S T LK G  MP +P+L+ +DGR LP  F G  LTS E+  L     +  
Sbjct: 129 KMGLAAKVKVSNTVLKYGSMMPDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLD 188

Query: 180 GNSPRNDASMEDMSLNGK-----AAFTSDRFNFGGGEYTFNDKRTMIGLWDAQLKDIYRQ 234
             + R+    +D+ ++ K         +D F+  G +Y FN+ R       A+L++IYRQ
Sbjct: 189 KYTARDSTDRQDIRVHCKNKRYACDTEADHFDLAGVDYRFNE-RFSAQYQVAKLENIYRQ 247

Query: 235 QYLNLTHSQPLGDWTLGANLGYFIGKEDGAERAGKLDNRTASALLSARYQGHTFYVGLQK 294
            +L L  SQPL   +L A++      + G  RAG++D+R  S +L     GH    G Q+
Sbjct: 248 HFLGLVASQPLPVGSLSADMRLIKSDDIGNARAGEIDHRAFSGMLGYSLGGHKLSAGWQR 307

Query: 295 VSGDDAWMRVNGTSGGTLANDSYNSSFDNAKERSWQVRHDFNFATVGVPGLTLMNRYIKG 354
           + G+ A   ++G S   L N +  + F  A+ERSWQVR+D++F  +GVPGLT   RYI G
Sbjct: 308 MYGNSAMPYLDG-SNPYLVNYAQVNDFAAAQERSWQVRYDYDFKALGVPGLTFFTRYING 366

Query: 355 DNVTV-GSVDDGKEWARETELAYVVQSGSFKDLSLKWRNSTMRRDFSTNA--FDENRLIV 411
           DN+ V GS  +GKEW R+TE  Y VQSG+FKD+S++ RNST R ++   A   DE R+IV
Sbjct: 367 DNIKVPGSSVEGKEWERDTEFKYQVQSGTFKDVSVRLRNSTYRSNYERWARDMDETRVIV 426

Query: 412 SYPLNL 417
           SY  ++
Sbjct: 427 SYNFSI 432