Pairwise Alignments

Query, 418 a.a., porin-like protein from Pseudomonas putida KT2440

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  264 bits (674), Expect = 4e-75
 Identities = 156/402 (38%), Positives = 222/402 (55%), Gaps = 24/402 (5%)

Query: 30  GFIEDAKATLNLRNFYINRNFVDPAHPQGKAEEWTQSFILDARSGFTQGTVGFGVDVLGL 89
           GFIED+K ++  R  Y +R+F +    Q + EE    F+    SGFTQGTVG GVD +G+
Sbjct: 31  GFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREETGLGFVGTFESGFTQGTVGVGVDAIGM 90

Query: 90  YSVKLDGGKGTTNTHLLPVHGDGRPADDFGRLGVALKAKLSETELKVGEWMPVLPILRSD 149
             +KLD GKG   T L P   DGR  DD+ + G A+K ++S+T LKVG+    LP+  +D
Sbjct: 91  LGLKLDSGKGRAGTGLFPTGSDGRSQDDYSKGGGAVKFRISDTVLKVGDQFTALPVFATD 150

Query: 150 DGRSLPQTFRGGQLTSREIAGLTLYAGQFRGNSPRNDASMEDMSLNGKAAFTSDRFNFGG 209
           D R LP+  +G  +TS EI GLTL+AG F         S+       + +F     N  G
Sbjct: 151 DSRLLPEIAQGTLITSNEIEGLTLHAGHF--------TSLTAQEQTNRDSFGLKEANVVG 202

Query: 210 GEYTFNDKRTMIGLWDAQLKDIYRQQYLNLTHSQPLGD-WTLGANLGYFIGKEDGAER-- 266
           G Y F D  +   L+ ++++D +R+ Y N+  + P+ D   L  +   +  K +G+    
Sbjct: 203 GTYAFTDNLS-TSLYYSKVEDYWRKYYANVNWALPISDNQGLVFDFNIYDTKSEGSAEYR 261

Query: 267 ---AGKLDNRTASALLSARYQGHTFYVGLQKVSGD-DAWMRVNGTSGGT--LANDSYNSS 320
                KLDNR  S   +     HTF +  QKV+GD D    ++G  GGT  LAN    S 
Sbjct: 262 AFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGDYGYGIDG--GGTIFLANSVARSD 319

Query: 321 FDNAKERSWQVRHDFNFATVGVPGLTLMNRYIKGDNVTVGSVDDGKEWARETELAYVVQS 380
           F+   E+SWQ R+D NFA  G+PGLT M RY++G +  V    +GKEW R+ ++ YV+Q 
Sbjct: 320 FNAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSDANVAGTSNGKEWERDVDIKYVLQE 379

Query: 381 GSFKDLSLKWRNSTMRRD----FSTNAFDENRLIVSYPLNLL 418
           G  KDLS + R +T R      + + + DE RLIV YPL++L
Sbjct: 380 GPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLSIL 421