Pairwise Alignments

Query, 315 a.a., Ribosomal RNA small subunit methyltransferase H from Pseudomonas putida KT2440

Subject, 345 a.a., Ribosomal RNA small subunit methyltransferase H from Xanthobacter sp. DMC5

 Score =  223 bits (568), Expect = 5e-63
 Identities = 143/309 (46%), Positives = 189/309 (61%), Gaps = 13/309 (4%)

Query: 9   HITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQA 68
           H+ V+L E +  LA +  G Y+DGTFG GG++  IL       R+L  D+DP AIA GQ 
Sbjct: 19  HLPVMLREVLAHLAPKDAGHYVDGTFGAGGYTSAILG--AADCRVLAIDRDPTAIAAGQT 76

Query: 69  LAAEDG-RFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDGP 127
           L    G R ++V   F+ L  E+AA      + GV+LD+GVSS QLD+ +RGFSF  DGP
Sbjct: 77  LVEASGQRLLLVHDRFSRLD-EIAAEQDFLPLDGVVLDIGVSSMQLDEADRGFSFRRDGP 135

Query: 128 LDMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTADL 187
           LDMRM  D G+SAA+  AT     +A +   +GEER +  +A+A+V+ RE+ P TRTA L
Sbjct: 136 LDMRMGGD-GLSAADLCATLDDVRLAHIIWTFGEERHSRAIAKAIVKAREEAPITRTAQL 194

Query: 188 AEVLKVANPAWEKG--KNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245
           AE+  V+   W K    +PATR FQ LRI VN EL +L   L AA  AL  GGRL V++F
Sbjct: 195 AEI--VSRVVWAKPGEMHPATRTFQALRIAVNEELSELVEALAAAERALRPGGRLVVVTF 252

Query: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIKLIGK-AQFASEAELKANPRSR 304
           HSLEDRIVK F+    + +A +  R+ P Q +  EP  +L+ K A      E+  NPRSR
Sbjct: 253 HSLEDRIVKTFLSH--RAKAPSASRHQP-QAEGPEPSFRLVAKGAVEPGPDEVAGNPRSR 309

Query: 305 SAVMRVAEK 313
           SA +R AE+
Sbjct: 310 SAKLRAAER 318