Pairwise Alignments

Query, 315 a.a., Ribosomal RNA small subunit methyltransferase H from Pseudomonas putida KT2440

Subject, 307 a.a., 16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199) from Variovorax sp. SCN45

 Score =  274 bits (701), Expect = 2e-78
 Identities = 159/317 (50%), Positives = 212/317 (66%), Gaps = 20/317 (6%)

Query: 3   IDSGFNHITVLLDEAVEAL---ALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKD 59
           + + + H TVLL+EAVEAL   +  A G Y+D TFGRGGH+R ILS+L P+GRL+ FDKD
Sbjct: 1   VTTPWTHTTVLLNEAVEALLSGSTAATGTYVDATFGRGGHARAILSRLAPEGRLIAFDKD 60

Query: 60  PQAIATGQALAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERG 119
            +A+A  +A    D RF I  + F  LG    A      + G+L+DLGVSSPQ+D+P RG
Sbjct: 61  AEAVA--EAARISDARFSIRHQGFRSLGELPDA-----SIDGLLMDLGVSSPQIDNPVRG 113

Query: 120 FSFLNDGPLDMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERR-EK 178
           FSF  DGPLDMRM+  +G S AE++ATA +++IA V ++YGEERFA ++A+A+V RR E+
Sbjct: 114 FSFRFDGPLDMRMDTTRGESVAEWLATAELQQIAEVIRDYGEERFAVQIAKAIVARRQER 173

Query: 179 QPFTRTADLAEVLKVANPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGG 238
            P + T +LAE++       E+G+NPATR FQ  RI +N EL +L+  LEA+L  L+ GG
Sbjct: 174 GPISTTTELAELVAGTVKTREQGQNPATRTFQAFRIFINAELEELQQALEASLSVLKPGG 233

Query: 239 RLAVISFHSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIKLIGKAQ--FASEAE 296
           RLAVISFHSLEDRIVK F+ K  K   D   R  P       PK+  +   +    S+AE
Sbjct: 234 RLAVISFHSLEDRIVKQFIAKHSKEVYD---RRAPFA----APKVMKLNALERIKPSQAE 286

Query: 297 LKANPRSRSAVMRVAEK 313
           +  NPRSRSA++RVAE+
Sbjct: 287 VSGNPRSRSAILRVAER 303