Pairwise Alignments

Query, 315 a.a., Ribosomal RNA small subunit methyltransferase H from Pseudomonas putida KT2440

Subject, 315 a.a., 16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199) from Sphingobium sp. HT1-2

 Score =  233 bits (594), Expect = 5e-66
 Identities = 149/306 (48%), Positives = 191/306 (62%), Gaps = 15/306 (4%)

Query: 9   HITVLLDEAVEALALRADGCYLDGTFGRGGHSRLILSKLGPQGRLLGFDKDPQAIATGQA 68
           HI VLL E ++ALA+     ++DGTFG GG+S   ++  G Q  +  FD+DP AI  GQA
Sbjct: 6   HIPVLLTEVLDALAITPGERHVDGTFGAGGYSSA-MAAAGAQ--VFAFDRDPDAIREGQA 62

Query: 69  LAAEDGRFVIVQRSFAELGAEVAARGLHGKVSGVLLDLGVSSPQLDDPERGFSFLNDGPL 128
           LA E G   ++   F+ +   +A RG+   VSG+ LD+GVSS QLD PERGFSF  DGPL
Sbjct: 63  LADEKG-ITLIPGEFSRMEELLAERGV-SSVSGITLDIGVSSMQLDRPERGFSFQADGPL 120

Query: 129 DMRMNPDQGVSAAEFIATAPVEEIARVFKEYGEERFAGRMARAVVERREKQPFTRTADLA 188
           DM M+   G+SAA+F+ TA  E+IA V   YGEE  + R+ARA+V+ R   P  RT  LA
Sbjct: 121 DMTMSQG-GMSAADFLNTAAEEDIADVIYRYGEEPRSRRVARAIVDAR---PLERTGQLA 176

Query: 189 EVLKVA---NPAWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGGRLAVISF 245
            V++ A    P     K+P+TR FQ +RIHVN EL +LE  LEAA   LE GGRLA+++F
Sbjct: 177 AVVRRALGYKP--HDKKDPSTRTFQAIRIHVNRELEELERALEAAEALLEPGGRLAIVTF 234

Query: 246 HSLEDRIVKLFMRKLVKGEADNLPRNLPVQHKVFEPKIKLIGKAQFASEAELKANPRSRS 305
           HSLEDRIVK F+RK    EA    R+LP +     P  +   KA    E EL  NPR+RS
Sbjct: 235 HSLEDRIVKQFLRKRSGSEAGG-SRHLPEKKAEVAPAFEKPAKAVKPGETELARNPRARS 293

Query: 306 AVMRVA 311
           A +R A
Sbjct: 294 ATLRSA 299