Pairwise Alignments

Query, 392 a.a., putative amino acid ABC transporter - permease subunit from Pseudomonas putida KT2440

Subject, 221 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 87.0 bits (214), Expect = 4e-22
 Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 11/168 (6%)

Query: 225 AIPSLSVLLFGSPVTWDMPQLKGFNFVGGWVLIPELLALTLALTIYTAAFIAEIVRSGIR 284
           AIP L +L++     + +P L G +F   W       A  +ALT++ AA++AEIVR+GI 
Sbjct: 64  AIPVLVILVW---FYFAVPILTGISFHPFW-------AALMALTLHIAAYVAEIVRAGIE 113

Query: 285 SVSHGQTEAARSLGLREGPTLRKVIIPQALRVIIPPLTSQYLNLAKNSSLAAGIGYPEMV 344
           S+  GQ  AA +LG+     +RKV++PQAL  ++P   S      K++++A  I  PE++
Sbjct: 114 SIRPGQIRAALALGMSRAQIVRKVVLPQALVRMLPAFGSVLSITIKDTAIATVIAVPELM 173

Query: 345 SLFAGTVLNQTGQAIEVIAITMSVYLAISISISLLMNWYNKRIALIER 392
              A T+  Q+ + IEV  + M +Y  I    + L++   KR+A + R
Sbjct: 174 KR-AETIAGQSYRPIEVFTVVMVIYFIILFPGTRLIDALYKRVAHLGR 220



 Score = 36.6 bits (83), Expect = 7e-07
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 86  GLLNTLLVTFIGVILATILGFIIGVARLSPNWMINKLATVYVETFRNIPPLLQILFWYFA 145
           GL  TLL++ +  I A +LG  +G+ R+     +      Y++T R IP L+ ++++YFA
Sbjct: 18  GLGVTLLLSVLTAIGALVLGTALGLGRVYGAAWLRIPIVFYIDTQRAIPVLVILVWFYFA 77

Query: 146 V 146
           V
Sbjct: 78  V 78