Pairwise Alignments

Query, 392 a.a., putative amino acid ABC transporter - permease subunit from Pseudomonas putida KT2440

Subject, 235 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  100 bits (250), Expect = 3e-26
 Identities = 70/204 (34%), Positives = 104/204 (50%), Gaps = 6/204 (2%)

Query: 186 VALALAIAAIALMVRYANKRFNETGVPFHKFWAGLLLFIAIPSLSVLLF---GSPVTWDM 242
           V+L ++  A  L V  A  R +          A + LF   P L  L F   G+P    +
Sbjct: 28  VSLLVSAGATVLGVFIAAGRSSSRPALLRATGAYVSLFRNTPLLVQLFFWYFGAPAV--L 85

Query: 243 PQLKGFNFVGGWVLIPELLALTLALTIYTAAFIAEIVRSGIRSVSHGQTEAARSLGLREG 302
           P+        G VL  ELL+  + LT+Y AA++ E +RSGIR V  GQ  AA +LG    
Sbjct: 86  PEAVREWVYAGHVLSFELLSALVGLTLYAAAYVGEDIRSGIRGVPAGQALAASALGFTRA 145

Query: 303 PTLRKVIIPQALRVIIPPLTSQYLNLAKNSSLAAGIGYPEMVSLFAGTVLNQTGQAIEVI 362
             + +V++PQALR+ +PPL  QY+N+ KN+SLA  +G  E+ S  +  V  +T +  +  
Sbjct: 146 QVMSQVVLPQALRIALPPLLGQYMNIVKNTSLAMAVGLVEL-SYASRQVEAETFKTFQAF 204

Query: 363 AITMSVYLAISISISLLMNWYNKR 386
                +Y+A   +I LL  W  +R
Sbjct: 205 GFATLLYIATIGAIELLAAWTARR 228



 Score = 48.5 bits (114), Expect = 2e-10
 Identities = 26/66 (39%), Positives = 33/66 (50%)

Query: 86  GLLNTLLVTFIGVILATILGFIIGVARLSPNWMINKLATVYVETFRNIPPLLQILFWYFA 145
           G L TL V+ +    AT+LG  I   R S    + +    YV  FRN P L+Q+ FWYF 
Sbjct: 21  GWLTTLWVSLLVSAGATVLGVFIAAGRSSSRPALLRATGAYVSLFRNTPLLVQLFFWYFG 80

Query: 146 VFLTLP 151
               LP
Sbjct: 81  APAVLP 86