Pairwise Alignments

Query, 342 a.a., putative amino-acid ABC transporter-binding protein YhdW from Pseudomonas putida KT2440

Subject, 277 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 80.1 bits (196), Expect = 6e-20
 Identities = 70/236 (29%), Positives = 108/236 (45%), Gaps = 14/236 (5%)

Query: 2   KMLKTTLAVLTAAAALGAVSTAQAGATLDAVKKKGFVQCGVSDGLPGFSVPD-AQGKIVG 60
           K + T+LA+   +  LG  + A     LD V+K G ++    DG P F   D A  K VG
Sbjct: 5   KFIVTSLALAIGSFTLGGAAWADR---LDDVRKAGVLRVAAFDGNPPFGYIDPASKKQVG 61

Query: 61  IDADVCRAVAAAVFGDATKVKFSQLNAKERFTALQSGEVDVLSRNTTWTSSRDAGMGLVF 120
            D D+    A ++     K++    N   R   L SG+VDV+  + T T  R   +   F
Sbjct: 62  HDIDLATEFAKSL---GVKIELVPTNPANRIPLLTSGKVDVVFASFTITDERAKAVD--F 116

Query: 121 AGVTYYDGVGFLVNKKLGVSSAKELDGATICIQAGTTTELNVSDFFRANGLKYTPITFDT 180
               +  G  FL  K + +  A ++    I  + GTT E N+    R N      + +D 
Sbjct: 117 TTPYFLVGQQFLAKKGV-LKDAAQIKDIRIGTEKGTTMESNL----RKNYPDAKVVLYDD 171

Query: 181 SDESAKSLESGRCDVLTSDKSQLFAQRSKLAAPTEYVVLPETISKEPLGPVVRKGD 236
           S  +  +L +G    +T+D  +L AQ + +    +Y + P T+SKE LG  V KG+
Sbjct: 172 SPFALAALRNGNVQAITNDGVKLTAQWNAIPDKEKYEIPPITVSKEYLGAAVPKGE 227