Pairwise Alignments

Query, 342 a.a., putative amino-acid ABC transporter-binding protein YhdW from Pseudomonas putida KT2440

Subject, 312 a.a., ABC transporter, substrate binding protein (amino acid) from Agrobacterium fabrum C58

 Score =  381 bits (979), Expect = e-110
 Identities = 184/313 (58%), Positives = 230/313 (73%), Gaps = 3/313 (0%)

Query: 32  VKKKGFVQCGVSDGLPGFSVPDAQGKIVGIDADVCRAVAAAVFGDATKVKFSQLNAKERF 91
           +K KGFV CGVS G+PGFS PD +G+  GID D CR +A AVFGD +K KF  L++K+RF
Sbjct: 1   MKGKGFVTCGVSAGIPGFSNPDDKGEWSGIDVDYCRGIATAVFGDPSKAKFVALSSKDRF 60

Query: 92  TALQSGEVDVLSRNTTWTSSRDAGMGLVFAGVTYYDGVGFLVNKKLGVSSAKELDGATIC 151
            ALQSGEVDVL+RNTTWT SRD  +G  F  V YYDG GF+  K L V SA EL GA +C
Sbjct: 61  PALQSGEVDVLTRNTTWTISRDTSLGFNFRTVNYYDGQGFIAKKGLNVKSALELSGAAVC 120

Query: 152 IQAGTTTELNVSDFFRANGLKYTPITFDTSDESAKSLESGRCDVLTSDKSQLFAQRSKLA 211
           +Q GTTTELN++D+F+ N L+Y P+ F+   ++  + +SGRCDV T+D+S L+A R KL 
Sbjct: 121 VQTGTTTELNLADYFKTNNLQYNPVVFEKESDATSAYDSGRCDVYTTDQSGLYAIRLKLK 180

Query: 212 APTEYVVLPETISKEPLGPVVRKGDEEWFSIVKWTLFAMLNAEEAGITSKNVEAEAKATK 271
            P + +VLPE ISKEPLGP VR+GD++WF IV W  +AM+NAEE GITSKNV+ E K + 
Sbjct: 181 NPDDNIVLPEVISKEPLGPAVRQGDDQWFDIVTWVHYAMVNAEELGITSKNVD-EQKTSA 239

Query: 272 NPDVARLLGAD--GEYGKDLKLPKDWVVQIVKQVGNYGEVFEKNLGQSTDLKIDRGMNAL 329
           NPDV RLLG +   + G DL +  DW   IVK VGNYGEVF++N+G  + LKI+RG NAL
Sbjct: 240 NPDVKRLLGTEEGTKIGTDLGVGNDWAYNIVKLVGNYGEVFDRNVGAGSPLKIERGQNAL 299

Query: 330 WNNGGIQYAPPVR 342
           W  GG+QYAPPVR
Sbjct: 300 WTKGGLQYAPPVR 312