Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 487 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas simiae WCS417

 Score =  775 bits (2002), Expect = 0.0
 Identities = 399/488 (81%), Positives = 425/488 (87%), Gaps = 13/488 (2%)

Query: 1   MLKALRKIFGKGEA---APQAAAPAASVTPEARPAAKPAAPHANPAPKAEQPAAATP--- 54
           MLKAL+K+FGK EA   AP ++APA   T  +R   K  A HA PA + ++P    P   
Sbjct: 1   MLKALKKMFGKSEAEPLAPDSSAPAP--TAGSRNDGKQPARHA-PAAQPKKPTVTPPEQA 57

Query: 55  ----PADQPAKDKPRRERKPKPQASLWKPEDFVVEPQEGKTRFHDFKLSNELMHAIHDLG 110
               PA  P   KPRRER P P    WK EDFVVEPQEGKTRFHDFKL+ ELMHAI DLG
Sbjct: 58  KPVEPAAAPVAPKPRRERAPTPPVIPWKLEDFVVEPQEGKTRFHDFKLAPELMHAIQDLG 117

Query: 111 FPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRAL 170
           FPYCTPIQAQVLG+TL G+DAIGRAQTGTGKTAAFLISII+QL QTPPPKERYMGEPRAL
Sbjct: 118 FPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRAL 177

Query: 171 IIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLD 230
           IIAPTRELVVQIAKDAA LTKYTGLNVM+FVGGMDFDKQLK LEARHCDILVATPGRLLD
Sbjct: 178 IIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLD 237

Query: 231 FNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMN 290
           FNQRG+VHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFT+DVMN
Sbjct: 238 FNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMN 297

Query: 291 LAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKD 350
           LAKQWTT+P+IVEIE ENVASE VEQH+YAVAG+DKYKLLYNLV  N WERVMVFANRKD
Sbjct: 298 LAKQWTTDPSIVEIEAENVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKD 357

Query: 351 EVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISH 410
           EVRRIEE+LVRDG+NAAQLSGDVPQHKRI+TLE FREG+I VLVATDVAGRGIHIDGISH
Sbjct: 358 EVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISH 417

Query: 411 VINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEALLGRKIKCEMPPDE 470
           VINFTLPE PDDYVHRIGRTGRAG +GVSISFAGEDDSYQLP+IE LLGRKI CE PP  
Sbjct: 418 VINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIETLLGRKISCETPPTH 477

Query: 471 LLKPVPRK 478
           LL+PV RK
Sbjct: 478 LLRPVERK 485