Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 626 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  281 bits (718), Expect = 6e-80
 Identities = 156/373 (41%), Positives = 221/373 (59%), Gaps = 6/373 (1%)

Query: 93  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 152
           F    LS  L+ AI   G+   TP+Q + +   L+G+D +  AQTGTGKT  F + I+ +
Sbjct: 3   FASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 153 L-QQTPPPKERYMG--EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQ 209
           L     P K +  G  +PR L++ PTREL  Q+        +          GG+  + Q
Sbjct: 63  LFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQ 122

Query: 210 LKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQT 269
           ++A+ +R  D+LVA PGRLLD   +G V L  VE++VLDEADRMLDMGF+  V++++ + 
Sbjct: 123 VQAM-SRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181

Query: 270 PPKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKL 329
           P K  RQ LLFSATF+ D+  LA +   NP  +E+ P N   E +EQ V+ +A S K  L
Sbjct: 182 PAK--RQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRAL 239

Query: 330 LYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 389
           L +L+T   WE+V+VF   K    R+ E L + G+ A  + G+  Q+ R + L  F+ G 
Sbjct: 240 LAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGS 299

Query: 390 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSY 449
           + +LVATD+A RG+ ID + HV+NF LP   +DYVHRIGRTGRAG SG +IS    D+  
Sbjct: 300 VRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359

Query: 450 QLPAIEALLGRKI 462
            L +IE +  +KI
Sbjct: 360 LLKSIERMTKQKI 372