Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 444 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  275 bits (702), Expect = 3e-78
 Identities = 157/377 (41%), Positives = 221/377 (58%), Gaps = 5/377 (1%)

Query: 93  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 152
           F    L   L+ A+  LG+   TP+QAQ +   L G+D +  AQTGTGKTA F + ++  
Sbjct: 3   FATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLLQL 62

Query: 153 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 212
           L    P         RALI+ PTREL  Q+    A   +   L   +  GG+  + Q+  
Sbjct: 63  LTMEGPKVAA--NSARALILCPTRELAEQVHASVAEYAQNLPLTTYAVYGGVSINPQMMK 120

Query: 213 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 272
           L  +  DILVATPGRL+D  ++  + L+ ++ +VLDEADRMLD+GF  ++  I R  P K
Sbjct: 121 LR-KGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKK 179

Query: 273 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYN 332
             RQTLLFSATF+DD+  LA Q   +P  +E+ P NVA+ TV+Q V  V    K +L  +
Sbjct: 180 --RQTLLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFVH 237

Query: 333 LVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITV 392
           L+ + +W++V+VFA  ++ V  + +KL   GINA  + GD PQ  R R L+ F+   + +
Sbjct: 238 LMRKGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQI 297

Query: 393 LVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLP 452
           LVATDVA RG+ I+ +  V+NF LP   +DY+HRIGRTGRAG +G +IS    D+   L 
Sbjct: 298 LVATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLS 357

Query: 453 AIEALLGRKIKCEMPPD 469
           AIE L  + +   M  D
Sbjct: 358 AIEMLTRQTLTRHMEQD 374