Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 601 a.a., ATP-dependent RNA helicase RhlE (EC 3.6.4.13) from Variovorax sp. SCN45

 Score =  291 bits (746), Expect = 3e-83
 Identities = 155/375 (41%), Positives = 228/375 (60%), Gaps = 4/375 (1%)

Query: 93  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 152
           F + KL+  ++ A+H+ G+   TPIQAQ +   L G D +G AQTGTGKTAAF + ++ +
Sbjct: 3   FDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFTLPMLHK 62

Query: 153 LQQTPPPKERYMGEP-RALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLK 211
           L  +     ++ G   RAL++ PTREL  Q+ +      KY  L+     GG+  + Q+ 
Sbjct: 63  LSMSRSATNKFGGTGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQIS 122

Query: 212 ALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPP 271
            L+ +  DILVATPGRLLD  Q+G + L  V++++LDEADRMLDMGFI  V++I+   P 
Sbjct: 123 KLK-KGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP- 180

Query: 272 KSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLY 331
             E+Q+LLFSATF+DD+ +LA     NP  +++ P N   + + Q ++ V    K  LL 
Sbjct: 181 -KEKQSLLFSATFSDDIRDLASTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLA 239

Query: 332 NLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRIT 391
           +++ +NKW +V+VF   K     + E L ++GI A  L G+  Q  R + L  F+ G I 
Sbjct: 240 HIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIR 299

Query: 392 VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQL 451
            LVATD+A RGI ID + HV+N+ +P   +DYVHRIGRTGRAG+SG ++SF   D+   +
Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGFM 359

Query: 452 PAIEALLGRKIKCEM 466
             IE    + I  ++
Sbjct: 360 QEIERFTKQTIPVQI 374