Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 463 a.a., ATP-dependent RNA helicase Atu1833 from Sphingobium sp. HT1-2

 Score =  293 bits (750), Expect = 8e-84
 Identities = 167/391 (42%), Positives = 237/391 (60%), Gaps = 12/391 (3%)

Query: 93  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 152
           F D  LS+EL+ A+ + G+   TPIQAQ +   L  +D IG AQTGTGKTA+F++ +I  
Sbjct: 3   FADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMIDI 62

Query: 153 LQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKA 212
           L      + R +  PR+LI+ PTREL  Q+A++     KY  L++   +GG+    Q+KA
Sbjct: 63  LAHG---RARAL-MPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQIKA 118

Query: 213 LEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 272
           LE +  D+L+ATPGRL+D  QRG++ L+   ++V+DEADRMLDMGFIP + +I  + P  
Sbjct: 119 LE-KGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLP-- 175

Query: 273 SERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYN 332
           ++RQTLLFSAT    +  LA ++  NP  +E+     AS  + Q +  V    K + L  
Sbjct: 176 AQRQTLLFSATMPPVIKKLADRFLDNPKSIEVARPATASTNITQRLVKVDSRKKREALRA 235

Query: 333 LVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITV 392
           ++     +  ++F NRK  VR + + L R G  + ++ GD+ Q  RI  LE FR+G + +
Sbjct: 236 MLEAEDVQSAVIFCNRKTTVRELNKSLQRHGFKSGEIHGDIDQASRIAELERFRDGSVNI 295

Query: 393 LVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLP 452
           LVA+DVA RG+ I G+SHV NF  P  PDDYVHRIGRTGRAG  GV+ +F   +D+  + 
Sbjct: 296 LVASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVAAEDAEAID 355

Query: 453 AIEALLGRKIK-CEMP----PDELLKPVPRK 478
            I+ L+G KI   E P    P    K  PRK
Sbjct: 356 NIQKLIGTKIDYVETPVAAAPAPRAKEEPRK 386