Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  283 bits (723), Expect = 2e-80
 Identities = 158/373 (42%), Positives = 223/373 (59%), Gaps = 6/373 (1%)

Query: 93  FHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQ 152
           F    LS  L+ AI   G+   TP+Q + +   L+G+D +  AQTGTGKT  F + I+ +
Sbjct: 3   FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 153 LQQTP-PPKERYMG--EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQ 209
           L     P K +  G  +PR L++ PTREL  Q+        +   L      GG+  + Q
Sbjct: 63  LFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNPQ 122

Query: 210 LKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQT 269
           ++A+ A+  D+LVA PGRLLD   +G+V L  VE++VLDEADRMLDMGFI  V++++ + 
Sbjct: 123 IQAI-AKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARL 181

Query: 270 PPKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKL 329
           P K  RQ LLFSATF+ D+ +LA +   NP  +E+ P N   E +EQ VY +  S K  L
Sbjct: 182 PAK--RQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRAL 239

Query: 330 LYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGR 389
           L +L+T   WE+V+VF   K    R+ E L + G+ AA + G+  Q+ R + L  F+   
Sbjct: 240 LAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANS 299

Query: 390 ITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSY 449
           + VLVATD+A RG+ ID + HV+NF LP   +DYVHRIGRTGRAG SG +IS    D+  
Sbjct: 300 VRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359

Query: 450 QLPAIEALLGRKI 462
            L +IE +  ++I
Sbjct: 360 LLKSIERVTKQRI 372