Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 567 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  275 bits (704), Expect = 2e-78
 Identities = 156/383 (40%), Positives = 228/383 (59%), Gaps = 12/383 (3%)

Query: 88  EGKTRFHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLI 147
           E +T F D  +S E++ A+  +G+   + IQAQ +   L G D IG+AQTGTGKTA+F I
Sbjct: 2   ENETLFADLGISAEILQAVEGMGYTQPSEIQAQSIPLMLEGHDVIGQAQTGTGKTASFGI 61

Query: 148 SIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT-GLNVMSFVGGMDF 206
            I+ ++  +         +P+ALI+ PTREL VQ+  +   L KY  G+   +  GG   
Sbjct: 62  PIVDRVDSSSK-------QPQALILCPTRELAVQVEGEITKLAKYKKGIFSTAIYGGEAI 114

Query: 207 DKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQII 266
           D+Q++ L+ R   I+V TPGR++D   RG + LD V+ +VLDEAD MLDMGF   +  ++
Sbjct: 115 DRQIRTLK-RGVQIVVGTPGRVMDHMNRGTLKLDTVKTIVLDEADEMLDMGFREDIETVL 173

Query: 267 RQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDK 326
            Q P   +RQT+ FSAT    +M+L +++ TNP IV+I+ + +  E + Q  Y V    K
Sbjct: 174 SQMP--EDRQTIFFSATMAKPIMDLTRKYQTNPEIVKIQRKELTVENISQVYYEVKPPLK 231

Query: 327 YKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFR 386
            +L+  L+  +++   +VF N K     + E L+  GI A  L GD+ Q +R + +  FR
Sbjct: 232 MELITRLINIHQFNLGVVFCNTKRATDEVTEGLIARGIMAEALHGDLSQAQRDKVMNKFR 291

Query: 387 EGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISF-AGE 445
           +G  TVLVATDVA RGI +D +  V N+ LP D + YVHRIGRTGRAG SG++ISF  G 
Sbjct: 292 KGHCTVLVATDVAARGIDVDNVEVVFNYDLPLDEEYYVHRIGRTGRAGRSGMAISFITGR 351

Query: 446 DDSYQLPAIEALLGRKIKCEMPP 468
            D ++L  +E  +   +    PP
Sbjct: 352 KDIFRLKDLERYIKTTLTKMNPP 374