Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 416 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  281 bits (719), Expect = 3e-80
 Identities = 150/371 (40%), Positives = 231/371 (62%), Gaps = 4/371 (1%)

Query: 92  RFHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIIS 151
           +F D ++   ++ A+ D G+   T IQAQ + + L G+D +G AQTGTGKTAAF I II 
Sbjct: 2   KFKDLRIIPPILKALEDKGYDEPTSIQAQAIPHILEGRDVLGCAQTGTGKTAAFAIPIIQ 61

Query: 152 QLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLK 211
            + + P   E +  + R+LI+ PTREL +QI ++     K T ++     GG+    Q+ 
Sbjct: 62  HIHEAPYANEPW-AKIRSLIVTPTRELAIQIGENIDEYAKNTNVSHTVIFGGVKQGAQVA 120

Query: 212 ALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPP 271
            L+ +   ILVATPGRLLD   +G + L  +++ VLDEADRMLDMGFI  ++++++  P 
Sbjct: 121 QLK-KGVHILVATPGRLLDLIDQGHISLKAIDLFVLDEADRMLDMGFINDIKKLLKILPK 179

Query: 272 KSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLY 331
           K  RQ+L FSAT  D+++ L+K+   NP  VE+ P +  +ET++Q++Y    S K  LL 
Sbjct: 180 K--RQSLFFSATMPDNILQLSKEILDNPQKVEVTPVSSTAETIQQYIYYTNKSSKKSLLI 237

Query: 332 NLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRIT 391
           +++ +   ++V++F+  K    RI   L +  I AA + GD  Q++R R L  F++ ++ 
Sbjct: 238 HILEKEGMDQVLLFSRTKHGADRIVRDLKKKHIKAAAIHGDKAQNQRQRVLSDFKDNKLR 297

Query: 392 VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQL 451
           VLVATD+A RGI ID + +VINF +P+ P+ Y+HRIGR+GRAG  G +IS    +++  +
Sbjct: 298 VLVATDIAARGIDIDKLKYVINFDIPDTPETYIHRIGRSGRAGEEGTAISLCEPEENADV 357

Query: 452 PAIEALLGRKI 462
            AIE L  + I
Sbjct: 358 KAIEKLANKNI 368