Pairwise Alignments

Query, 480 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas putida KT2440

Subject, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  289 bits (739), Expect = 2e-82
 Identities = 174/384 (45%), Positives = 231/384 (60%), Gaps = 13/384 (3%)

Query: 77  WKPEDFVVEPQEGKTRFHDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQ 136
           W+PE   +      T F++  LS +++ ++  LG+   TPIQA+ +   L G+D IG AQ
Sbjct: 5   WRPERQYI-----LTSFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQ 59

Query: 137 TGTGKTAAFLISIISQL-QQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGL 195
           TGTGKTAAF + II  L +Q   P  R     R LI+APTRELV QI  +  +  K T L
Sbjct: 60  TGTGKTAAFGLPIIEMLMKQADRPANR---TTRTLILAPTRELVNQIGDNLRSFVKKTPL 116

Query: 196 NVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLD 255
            +   VGG   +KQ   LE +  DILVATPGRLLD   R  + L  V  +VLDEAD+MLD
Sbjct: 117 RINQVVGGASINKQQLQLE-KGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLD 175

Query: 256 MGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVE 315
           +GFI  +R+I R  PPK  RQTLLFSAT    +  LA  + T+P  VE+ P   A++ VE
Sbjct: 176 LGFIHDLRKISRMVPPK--RQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVE 233

Query: 316 QHVYAVAG-SDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVP 374
           Q+V+ VAG +DK  LL   + +N   R +VF   K    ++ + L   G   A + G+  
Sbjct: 234 QYVHFVAGKNDKTDLLKKSLNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKS 293

Query: 375 QHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAG 434
           Q +R R L+ F++G I VLVATDVA RGI I  ++HV N+ LPE PD YVHRIGRT RAG
Sbjct: 294 QGQRERALKGFKDGEIKVLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAG 353

Query: 435 TSGVSISFAGEDDSYQLPAIEALL 458
             G++I+F   D++  L  IE L+
Sbjct: 354 RDGIAIAFCAPDETRLLHDIEKLM 377