Pairwise Alignments

Query, 484 a.a., putative Multidrug efflux MFS outer membrane protein from Pseudomonas putida KT2440

Subject, 497 a.a., Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system from Variovorax sp. SCN45

 Score =  245 bits (626), Expect = 2e-69
 Identities = 157/493 (31%), Positives = 244/493 (49%), Gaps = 32/493 (6%)

Query: 3   PGLRLSPLLLAVLL-TGCTLGPDFQRPDSQAPQQWAPLQGEAAASQPQAEPLELRWWETF 61
           P L  + L LAVLL  GC +GPD+ RP  + P  +    G    + PQ    +  WW+ +
Sbjct: 7   PPLSRAALALAVLLLAGCAVGPDYVRPQMEVPAAFKETGGPWKTAAPQTIDADHPWWDAY 66

Query: 62  HDARLSALIQRVAERNLDLQMASARLLQSRALRSTLAADEVPSVDVNAGYSRARNSADGL 121
            D+ L  L+ +    N ++++A A+  Q++A+ +   A+  P+V VNAG  R ++++ G 
Sbjct: 67  GDSTLGDLMAKANAANQNIRVAEAQYRQAQAITAAARANFFPTVGVNAGAVRGQSNSTGT 126

Query: 122 -----SDPSGKAGKEAFNLWQGDLVAGWELDLWGRVRRQVEAADATVEVAENDRRGVLLA 176
                +D  G             L A WE DLWG VRR VEA  A+ + + +D  G  L+
Sbjct: 127 VKLGTTDTLG-------------LSASWEPDLWGAVRRSVEAGTASEQASADDLAGARLS 173

Query: 177 LLSETAGNYIQLRAVQHTLDVTQDNLRVARHSLKLSQDRQAEGVATRLDVAQASAQVASI 236
           + +  A +Y+Q+R +    D+          +L+L+Q + A G   R DVA A +Q+ + 
Sbjct: 174 IQTTLAQDYLQIRVIDLERDLYASTTTAYAKALELTQHQYAAGTVLRSDVALAESQLKTA 233

Query: 237 ESRLPSLEAQRDDLINALSLLAAEPPRSLQAELLQGGELPAPQQKFAI------------ 284
           +++   L+AQR  L +A+++L  + P S     L+    P   +  ++            
Sbjct: 234 QAQAVDLDAQRAQLEHAIAVLTGQAPASFSLPPLESSGQPQTPESLSLASALHVQLPVSP 293

Query: 285 -GLPSELAERRPDIRQAEARLHAATASIGVAKADFYPSIRLSGSVGFQALQLSDFGGWDS 343
            GLPSEL ERRPDI  AE R+ AA A+IGVAKA +YP I LS S GF A  L+      S
Sbjct: 294 AGLPSELLERRPDIAGAERRVQAANANIGVAKAAYYPQIMLSASGGFSAASLATLFNTPS 353

Query: 344 RRFAFGPQMSLPIFEGGRLKGTLELREAQQQEAALNYRKVVLGAWHEIDDVLRLYNASQL 403
           R ++ G  ++  +F+GG  K   +   A    +   Y++ VLG + +++D L        
Sbjct: 354 RVWSLGAALAQTVFDGGLRKAHTDQAVAAYDASVAQYKQTVLGGFQQVEDNLATLRVLDG 413

Query: 404 RRDHLAEAVRQNRIALETAQRQYVEGAVDFLNVLTVQGALLASEEQWIDSSAAVSQALVG 463
                A+AVR +++A   A  QY  G   +L+V+T Q   L ++            A V 
Sbjct: 414 ESTLQADAVRASQLAERLALAQYRAGTATYLSVVTAQTLSLTNQRTAAQVLGRQLAASVS 473

Query: 464 LYKALGGGWQAFD 476
           L  A GGGW A D
Sbjct: 474 LISATGGGWNAAD 486



 Score = 41.6 bits (96), Expect = 6e-08
 Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 17/197 (8%)

Query: 296 DIRQAEARLHAATASIGVAKADFYPSIRL--------SGSVGFQALQLSDFGGWDSRRFA 347
           +IR AEA+   A A    A+A+F+P++ +        S S G   L  +D  G  +   +
Sbjct: 84  NIRVAEAQYRQAQAITAAARANFFPTVGVNAGAVRGQSNSTGTVKLGTTDTLGLSA---S 140

Query: 348 FGPQMSLPIFEGGRLKGTLELREAQQQEAALNYRKVVLGAWHEIDDVLRLYNASQLRRDH 407
           + P +       G ++ ++E   A +Q +A +     L     +           L RD 
Sbjct: 141 WEPDL------WGAVRRSVEAGTASEQASADDLAGARLSIQTTLAQDYLQIRVIDLERDL 194

Query: 408 LAEAVRQNRIALETAQRQYVEGAVDFLNVLTVQGALLASEEQWIDSSAAVSQALVGLYKA 467
            A        ALE  Q QY  G V   +V   +  L  ++ Q +D  A  +Q    +   
Sbjct: 195 YASTTTAYAKALELTQHQYAAGTVLRSDVALAESQLKTAQAQAVDLDAQRAQLEHAIAVL 254

Query: 468 LGGGWQAFDEPPPNAHG 484
            G    +F  PP  + G
Sbjct: 255 TGQAPASFSLPPLESSG 271