Pairwise Alignments

Query, 513 a.a., putative Multidrug efflux MFS transporter from Pseudomonas putida KT2440

Subject, 510 a.a., Inner-membrane proton/drug antiporter (MSF type) of tripartite multidrug efflux system from Variovorax sp. SCN45

 Score =  110 bits (274), Expect = 2e-28
 Identities = 99/408 (24%), Positives = 177/408 (43%), Gaps = 8/408 (1%)

Query: 36  VLLAVLCAGLNESVTKISLADIRGAMGIGADEGAWLLAVYSAASVSAMAFAPWLATTFSL 95
           ++LA +   L+ ++  ++L  ++G++    D+  W+L  Y  AS  A+    WL   +  
Sbjct: 19  IMLATIMQALDTTIANVALPHMQGSLQASQDQITWVLTSYIVASAIALPLTGWLCGHWGR 78

Query: 96  RR-FTMSAVGLFAVLGLLQPFAPNLHSLMLLRVLQGFAAGALPPMLMSVALRFLPPGIKV 154
           RR F +S +G F V   L   A +L  ++  R+LQG    AL P+  +V L   P     
Sbjct: 79  RRVFIISVIG-FTVASALCGLATSLVGIVAARLLQGIFGAALVPLSQAVLLDINPREKVG 137

Query: 155 YGLACYALTATFGPNLGTPLAGLWTEYVGWQWAFWQIILPSLLAMVCVGWGLPQDPLRLE 214
             +A +      GP LG  L G  TE   W+W F+  +   + A   +   LP+   + E
Sbjct: 138 QAMAIWGAGIMVGPILGPLLGGWLTENFDWRWVFFINLPVGIFAFWGIARYLPESRPQGE 197

Query: 215 RFKQFDWRGVLLGLPAISCTVLGLSLGDRWGWFDSPLICWLLGGGLLLLVLFMYNEWS-E 273
           +   F +  V L L AI    L L  G++  WFDS  I       L+    F+ + W+ +
Sbjct: 198 KLDIFGF--VTLSL-AIGMLQLFLDRGEQLDWFDSWEIKLEAAAALVAFGFFVVHTWTVQ 254

Query: 274 PLPFFQLRLLQRRNLSFALVTLAGVLVVLSGVGSIPSAYLAQIQGYRPAQTSPLMMLVAM 333
            + FF   LL+ RN    L+    V ++L    ++   +L  + GY    T  +     +
Sbjct: 255 GVSFFDRDLLKDRNFVTGLLFAFIVGMILFATMALLPNFLQGLMGYPVVYTGQVTAPRGV 314

Query: 334 PQLIALPLTAALCNIRAVDCRWVLGIGLAMLAVSCVGSSLLTSEWIRGDFYPFYLLQVFG 393
             +IA+ +   L  ++ VD R ++ +G  + A S    + LT +           +Q  G
Sbjct: 315 GTMIAMIIVGRL--VQKVDVRAIMAVGFGLTAFSLYQMTRLTLQMDSTLIIVSGFIQGLG 372

Query: 394 QPMAVLPLLMLSTNGMTPQEGPFASSWFNTVKGLAAVIAGGLLDVLGT 441
                +PL   +   + P+     +  F+ ++ + + +   ++  L T
Sbjct: 373 IGFTFVPLSTATFATLAPRLRNQGTPIFSLLRNIGSSVGISIVQALLT 420



 Score = 24.6 bits (52), Expect = 0.009
 Identities = 17/50 (34%), Positives = 24/50 (48%)

Query: 93  FSLRRFTMSAVGLFAVLGLLQPFAPNLHSLMLLRVLQGFAAGALPPMLMS 142
           FSL R   S+VG+  V  LL   +   H+ +   V  G  A +  P +MS
Sbjct: 400 FSLLRNIGSSVGISIVQALLTEGSSKAHAQIAATVAPGNQALSTLPQMMS 449