Pairwise Alignments

Query, 433 a.a., component of the Tol biopolymer transport system from Pseudomonas putida KT2440

Subject, 1067 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score = 50.4 bits (119), Expect = 3e-10
 Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 30/192 (15%)

Query: 186 DYDGARAVTLLQSREPILSPRFAPDGKRIAYVSFEQKRPRIFVQNIDTGRREQVTNFEGL 245
           D  G  A  LL       +P F+PDGK+ A++S       +++ N+D    +Q++  + L
Sbjct: 68  DAGGGTARPLLTGMAFERNPVFSPDGKQFAFLSDRSGVTNLWIANVDGTGLKQLSQDQSL 127

Query: 246 --NGAPAWSPDG----------SRLAFVL---SKDGNPDIYVMNVAS--RQISRVTAGPG 288
               +PAWSPDG          S LAF L    +DG   I +    S     +++ A   
Sbjct: 128 AIYSSPAWSPDGRSVYVSRTVHSILAFELFMYDRDGGSGIQITKAGSPDNWDAKMNAMGA 187

Query: 289 INTEPFWGKDGNTLYFTSDRG--------GKPQIYKQSVSGGGAERVTFVGNYNANPKLS 340
           + T      DG  LY+ + RG            I ++ +  G  E +         P LS
Sbjct: 188 VAT-----PDGRYLYYATKRGHTWTENDLPNWSIARRDLKSGQDETIIQSAGGAMRPALS 242

Query: 341 ADEKTLVMIHRQ 352
            D K L    RQ
Sbjct: 243 HDGKLLAYASRQ 254



 Score = 43.5 bits (101), Expect = 3e-08
 Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 15/160 (9%)

Query: 249 PAWSPDGSRLAFVLSKDGNPDIYVMNVASRQISRVTAGPGINTEPFWGKDGNTLYFTSDR 308
           P  SPDG  + F L  D    IY ++        +  G      P +  DG    F SDR
Sbjct: 47  PDMSPDGRTILFDLLGD----IYALDAGGGTARPLLTGMAFERNPVFSPDGKQFAFLSDR 102

Query: 309 GGKPQIYKQSVSGGGAERVTFVGN--YNANPKLSADEKTLVMIHRQQGFTNFKVAAQDLQ 366
            G   ++  +V G G ++++   +    ++P  S D +++ +         F++   D  
Sbjct: 103 SGVTNLWIANVDGTGLKQLSQDQSLAIYSSPAWSPDGRSVYVSRTVHSILAFELFMYDRD 162

Query: 367 RGS-VKILSETSLDE--------SPTVAPNGTMLIYATRQ 397
            GS ++I    S D              P+G  L YAT++
Sbjct: 163 GGSGIQITKAGSPDNWDAKMNAMGAVATPDGRYLYYATKR 202



 Score = 38.5 bits (88), Expect = 1e-06
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 13/113 (11%)

Query: 205 PRFAPDGKRIAYVSFEQK-RPRIFVQNIDTGRREQVTNFEGLNGAPAWSPDGSRLAFVLS 263
           P ++PDGK IAYVS+  K    ++      G   ++T        P ++PDG  +  + +
Sbjct: 396 PSWSPDGKSIAYVSWTAKDGGHVWTIPATGGTPRRLTQIPAYYSQPIFTPDGKGVVALRA 455

Query: 264 KD------------GNPDIYVMNVASRQISRVTAGPGINTEPFWGKDGNTLYF 304
                           P   +   AS   +R+ A      +P +GKD +TLYF
Sbjct: 456 NQYDRLRTASEIDPARPTDIIHMPASGGAARLVAHAMGARQPQFGKDRDTLYF 508



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 248 APAWSPDGSRLAFVLSKDGNPDIYVMNVASRQI-SRVTAGPGINTEPFWGKDGNTLYF-- 304
           AP  SPDG  +AF         +YV  + +     R+ A      +P W  DG ++ +  
Sbjct: 356 APRQSPDGGSVAFTALGG----LYVQKLTANMTPKRIVAADAF--QPSWSPDGKSIAYVS 409

Query: 305 -TSDRGGKPQIYKQSVSGGGAERVTFVGNYNANPKLSADEKTLVMIHRQQ 353
            T+  GG   ++    +GG   R+T +  Y + P  + D K +V +   Q
Sbjct: 410 WTAKDGG--HVWTIPATGGTPRRLTQIPAYYSQPIFTPDGKGVVALRANQ 457



 Score = 36.2 bits (82), Expect = 5e-06
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 7/83 (8%)

Query: 159 GAFST---RMLYVTAERFST----NNTRYTLQRSDYDGARAVTLLQSREPILSPRFAPDG 211
           GA +T   R LY   +R  T    +   +++ R D    +  T++QS    + P  + DG
Sbjct: 186 GAVATPDGRYLYYATKRGHTWTENDLPNWSIARRDLKSGQDETIIQSAGGAMRPALSHDG 245

Query: 212 KRIAYVSFEQKRPRIFVQNIDTG 234
           K +AY S + ++  + ++N++TG
Sbjct: 246 KLLAYASRQGQKDGLRLRNLETG 268