Pairwise Alignments

Query, 433 a.a., component of the Tol biopolymer transport system from Pseudomonas putida KT2440

Subject, 725 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score = 53.5 bits (127), Expect = 2e-11
 Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 9/112 (8%)

Query: 204 SPRFAPDGKRIAYVSFEQKRPR------IFVQNID-TGRREQVTNFEGLNGAPAWSPDGS 256
           +P  +PDGK + Y   E    +      +++   D +    ++T  +   G PAW+PD  
Sbjct: 51  APVASPDGKWVVYALSEPSYEKDGAVSDLWIVPADGSAAPRRLTATKAGEGDPAWAPDSR 110

Query: 257 RLAFVLSKDGNP--DIYVMNVASRQISRVTAGPGINTEPFWGKDGNTLYFTS 306
           R+AF   ++G+    IYV+++A  +  RVT+ P    +P W  DG  + F S
Sbjct: 111 RIAFSAKREGDDVAQIYVLDLAGGEARRVTSIPTGAGKPIWRPDGQAILFES 162



 Score = 47.0 bits (110), Expect = 2e-09
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 15/113 (13%)

Query: 247 GAPAWSPDGSRLAFVLS-----KDGN-PDIYVM----NVASRQISRVTAGPGINTEPFWG 296
           GAP  SPDG  + + LS     KDG   D++++    + A R+++   AG G   +P W 
Sbjct: 50  GAPVASPDGKWVVYALSEPSYEKDGAVSDLWIVPADGSAAPRRLTATKAGEG---DPAWA 106

Query: 297 KDGNTLYFTSDRGGK--PQIYKQSVSGGGAERVTFVGNYNANPKLSADEKTLV 347
            D   + F++ R G    QIY   ++GG A RVT +      P    D + ++
Sbjct: 107 PDSRRIAFSAKREGDDVAQIYVLDLAGGEARRVTSIPTGAGKPIWRPDGQAIL 159



 Score = 38.1 bits (87), Expect = 9e-07
 Identities = 48/220 (21%), Positives = 75/220 (34%), Gaps = 73/220 (33%)

Query: 205 PRFAPDGKRIAYVSFEQKRP-----RIFVQNIDTGRREQVTNFEGLNGAPAWSPDGSRLA 259
           P +APD +RIA   F  KR      +I+V ++  G   +VT+     G P W PDG  + 
Sbjct: 103 PAWAPDSRRIA---FSAKREGDDVAQIYVLDLAGGEARRVTSIPTGAGKPIWRPDGQAIL 159

Query: 260 FVLS----------------------------------------KDGNPDIYVMNVA--- 276
           F  +                                         D  P +++  +A   
Sbjct: 160 FESAVYPGAMDAAANKKTAEERKARKYNMRVYEHFPIRYWNDWLDDKRPSLWLQPLAEGA 219

Query: 277 -SRQISRVT-------------AGPGINTEPFWGKDGNTLYFTS--DRGGKPQ------I 314
            +R I  VT             +  G+   P W  DG  + FT+  +R           +
Sbjct: 220 PARDILSVTKLAQADGFGGNAQSDGGMTLAPVWSPDGKEIIFTATTERWNAAHARVNFGL 279

Query: 315 YKQSVSGGGAERVTFVGNYNANPKLSADEKTLVMIHRQQG 354
           Y+    GG    VT       + K + D K+L+  +  QG
Sbjct: 280 YRMPADGGEPVLVTPTPGEYGDMKFTPDGKSLIFKYNSQG 319



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 20/165 (12%)

Query: 203 LSPRFAPDGKRIAYVSFEQKRPR--------IFVQNIDTGRREQVTNFEGLNGAPAWSPD 254
           L+P ++PDGK I + +  ++           ++    D G    VT   G  G   ++PD
Sbjct: 248 LAPVWSPDGKEIIFTATTERWNAAHARVNFGLYRMPADGGEPVLVTPTPGEYGDMKFTPD 307

Query: 255 GSRLAFVLSKDGNPDIYVMNVASRQISRVTAGPGINTEPFWGK--------DGNTLYFTS 306
           G  L F  +  G  ++Y +    R          + T  F  +        D  +LY T 
Sbjct: 308 GKSLIFKYNSQGE-EVYDLARLHRVAWPAGGAATLLTGAFDREVDGYAVTPDSRSLYLTV 366

Query: 307 DRGGKPQIYKQSVSGGGAERVTF--VGNYNANPKLSADEKTLVMI 349
              G   +Y+  VSGG  E V    VG Y A   + +D K+  +I
Sbjct: 367 PDAGMENLYRVPVSGGTPELVIAPKVGGY-AGIDIPSDAKSTQII 410



 Score = 31.2 bits (69), Expect = 1e-04
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 13/94 (13%)

Query: 244 GLNGAPAWSPDGSRLAFVLSKDG--------NPDIYVMNVASRQISRVTAGPGINTEPFW 295
           G+  AP WSPDG  + F  + +         N  +Y M     +   VT  PG   +  +
Sbjct: 245 GMTLAPVWSPDGKEIIFTATTERWNAAHARVNFGLYRMPADGGEPVLVTPTPGEYGDMKF 304

Query: 296 GKDGNTLYFTSDRGGK-----PQIYKQSVSGGGA 324
             DG +L F  +  G+      ++++ +   GGA
Sbjct: 305 TPDGKSLIFKYNSQGEEVYDLARLHRVAWPAGGA 338