Pairwise Alignments

Query, 433 a.a., component of the Tol biopolymer transport system from Pseudomonas putida KT2440

Subject, 276 a.a., tolB protein from Agrobacterium fabrum C58

 Score = 67.4 bits (163), Expect = 5e-16
 Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 10/153 (6%)

Query: 251 WSPDGSRLAFVLSKDGNPDIYVMNVASRQISRVTAGPGINTEPFWGKDGNTLYFTSDRGG 310
           WSPDG    +   +D   DIY M++ S   +R+T G G N  P +  DG  +YF S R G
Sbjct: 117 WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 176

Query: 311 KPQIYKQSVSGGGAERVT--FVGNYNANPKLSADEKTLVM----IHRQQGFTNFKVAAQD 364
           + QI++  V G   ER+T    G++  +P  S D+   V     +       + +V   D
Sbjct: 177 QMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD 236

Query: 365 LQRGSVKILSE----TSLDESPTVAPNGTMLIY 393
           +  G+V+ L +         SP  +P+G    Y
Sbjct: 237 MDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAY 269



 Score = 51.2 bits (121), Expect = 4e-11
 Identities = 29/100 (29%), Positives = 48/100 (48%)

Query: 207 FAPDGKRIAYVSFEQKRPRIFVQNIDTGRREQVTNFEGLNGAPAWSPDGSRLAFVLSKDG 266
           ++PDGK   Y     +   I+  +ID+G   ++T+ EG N  P +SPDG  + F  S+ G
Sbjct: 117 WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 176

Query: 267 NPDIYVMNVASRQISRVTAGPGINTEPFWGKDGNTLYFTS 306
              I+ + V    + R+T     +  P     G+ + F S
Sbjct: 177 QMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVS 216



 Score = 34.7 bits (78), Expect = 4e-06
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 174 STNNTRYTLQRSDYDGARAVTLLQSREPILSPRFAPDGKRIAYVS-----FEQKRP---R 225
           S+   +  + R   DG+    +  S      P  +P G ++ +VS     F+  R    R
Sbjct: 172 SSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 231

Query: 226 IFVQNIDTGRREQVTNFEGLNG---APAWSPDGSRLAFV 261
           + + ++D G  E + +  G  G   +P WSPDG   A+V
Sbjct: 232 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYV 270



 Score = 32.0 bits (71), Expect = 2e-05
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 11/107 (10%)

Query: 205 PRFAPDGKRIAYVSFEQKRPRIFVQNIDTGRREQVTNFEGLNGAPAWSPDGSRLAFVL-- 262
           P ++PDG+ I + S    + +I+   +D    E++T+    +  P  SP G ++ FV   
Sbjct: 159 PDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYD 218

Query: 263 ------SKDGNPDIYVMNVASRQISR---VTAGPGINTEPFWGKDGN 300
                  +D +  + +M++    +     +  G G    P W  DG+
Sbjct: 219 ADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGD 265



 Score = 30.8 bits (68), Expect = 5e-05
 Identities = 54/263 (20%), Positives = 88/263 (33%), Gaps = 57/263 (21%)

Query: 223 RPRIFVQNIDTGRREQVTNFEGLNGAPAWSPDG-------SRLAFVLSKDGNPDIYVMNV 275
           R  I + NI T +   V     L  AP WSPDG         L + LS  G+P    ++ 
Sbjct: 2   RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDT 61

Query: 276 ASRQISRVTAG------------------------------PGINTEPF------WGKDG 299
               I     G                              P + T+        W  DG
Sbjct: 62  GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDG 121

Query: 300 NTLYFTSDRGGKPQIYKQSVSGGGAERVTFVGNYNANPKLSADEKTLVMIHRQQGFTNFK 359
            +  +   R     IY   +  G   R+T     N  P  S D + +     + G    +
Sbjct: 122 KSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG--QMQ 179

Query: 360 VAAQDLQRGSVKILSETSL-DESPTVAPNGTMLIYATR-----QQGRGVLMLVSL----- 408
           +    +   SV+ +++++  D  P  +P+G  +++ +         R + + V L     
Sbjct: 180 IWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 239

Query: 409 -NGRVRLPLPTAQGEVREPSWSP 430
            N      L   QG +  P+WSP
Sbjct: 240 GNVETLFDLFGGQGTMNSPNWSP 262



 Score = 26.6 bits (57), Expect = 0.001
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 182 LQRSDYDGARAVTLLQ---SREPILSPRFAPDGKRIAYVSF 219
           +Q  D DG    TL      +  + SP ++PDG   AYV +
Sbjct: 232 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 272