Pairwise Alignments

Query, 348 a.a., Holliday junction ATP-dependent DNA helicase RuvB from Pseudomonas putida KT2440

Subject, 440 a.a., recombination factor protein RarA from Pseudomonas simiae WCS417

 Score = 52.0 bits (123), Expect = 3e-11
 Identities = 72/313 (23%), Positives = 122/313 (38%), Gaps = 86/313 (27%)

Query: 23  IRPLSLDEYIGQPVVREQMALFIQAARGRG--ESLD----HTLIF-GPPGLGKTTLANII 75
           +R  +LDEY+GQ  +          ARG+   E+L+    H++IF GPPG+GKTTLA ++
Sbjct: 17  LRSTNLDEYVGQEHL---------LARGKPLREALEQGALHSMIFWGPPGVGKTTLARLL 67

Query: 76  AHEMGVSVKSTSGPI-----LERPGDLAAMLT-NLEPHDVLFIDEIHRLSPVVEEVLYPA 129
           A       ++ S  +     + +  ++A           +LF+DE+HR +   ++   P 
Sbjct: 68  AKVSDAHFETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPY 127

Query: 130 MEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNDKDL 189
           +ED  L                      +GATT      NP                 +L
Sbjct: 128 VEDGTL--------------------IFIGATTE-----NP---------------SFEL 147

Query: 190 STIVSRSANILGLAIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGKGQITKAVADM 249
           +  +   A +  L   D+ A +             +LL+R     +  GK Q+  +    
Sbjct: 148 NNALLSRARVYVLKSLDEAAMQ-------------KLLQRALSEDKGLGKRQLRVSEEGF 194

Query: 250 ALNLLDVDERGFDHSDRRLLLTMIEKF-----DGGPVGVDNLAAAISEERHTIEDVLEPY 304
            + L   D       D R  L ++E       DG  +GVD L + + + R   +   E +
Sbjct: 195 KILLTAAD------GDGRRFLNLVENASDLAEDGSEIGVDLLQSLLGDTRRRFDKGGEAF 248

Query: 305 LIQQGYIMRTPRG 317
             Q   + ++ RG
Sbjct: 249 YDQISALHKSVRG 261