Pairwise Alignments

Query, 348 a.a., Holliday junction ATP-dependent DNA helicase RuvB from Pseudomonas putida KT2440

Subject, 441 a.a., DNA-dependent ATPase required for recombination from Pseudomonas putida KT2440

 Score = 56.2 bits (134), Expect = 2e-12
 Identities = 76/313 (24%), Positives = 123/313 (39%), Gaps = 86/313 (27%)

Query: 23  IRPLSLDEYIGQPVVREQMALFIQAARGRG--ESLD----HTLIF-GPPGLGKTTLANII 75
           +RP SLDEY+GQ  +          ARG+   E+L+    H++IF GPPG+GKTTLA ++
Sbjct: 17  LRPSSLDEYVGQEHL---------LARGKPLREALEQGALHSMIFWGPPGVGKTTLARLL 67

Query: 76  AHEMGVSVKSTSGPI-----LERPGDLAAMLT-NLEPHDVLFIDEIHRLSPVVEEVLYPA 129
           A       ++ S  +     + +  ++A           +LF+DE+HR +   ++   P 
Sbjct: 68  AQFCDAHFETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFLPY 127

Query: 130 MEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNDKDL 189
           +ED  L                      +GATT      NP                 +L
Sbjct: 128 VEDGTL--------------------LFIGATTE-----NP---------------SFEL 147

Query: 190 STIVSRSANILGLAIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGKGQITKAVADM 249
           +  +   A +  L   D+ A           ++ NR L       E RG G+    V D 
Sbjct: 148 NNALLSRARVYVLKSLDEAALR---------KLVNRAL------TEERGLGKRNLRVGDD 192

Query: 250 ALNLLDVDERGFDHSDRRLLLTMIEKF-----DGGPVGVDNLAAAISEERHTIEDVLEPY 304
           A  +L     G    D R +L  +E       DG  + V+ L + + + R   +   E +
Sbjct: 193 AFKMLMAAADG----DGRRMLNFLENASDLAEDGSEIDVEMLQSLLGDSRRRFDKGGEAF 248

Query: 305 LIQQGYIMRTPRG 317
             Q   + ++ RG
Sbjct: 249 YDQISALHKSVRG 261