Pairwise Alignments

Query, 348 a.a., Holliday junction ATP-dependent DNA helicase RuvB from Pseudomonas putida KT2440

Subject, 345 a.a., Holliday junction DNA helicase, RuvB subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  389 bits (998), Expect = e-113
 Identities = 193/318 (60%), Positives = 248/318 (77%), Gaps = 2/318 (0%)

Query: 20  DRAIRPLSLDEYIGQPVVREQMALFIQAARGRGESLDHTLIFGPPGLGKTTLANIIAHEM 79
           ++A+RPLS D++ GQ  + + + +F+ AA+ RGESLDH L+ GPPGLGKTTL++IIA+E+
Sbjct: 21  EKALRPLSFDDFTGQQKIVDNIQVFVMAAKKRGESLDHVLLHGPPGLGKTTLSHIIANEL 80

Query: 80  GVSVKSTSGPILERPGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDFQLDIMI 139
             S+K TSGP+L++P DLA +LTNLE  DVLFIDEIHRL+ VVEE LY AMEDF++DIM+
Sbjct: 81  ESSLKITSGPVLDKPSDLAGLLTNLEEGDVLFIDEIHRLNAVVEEYLYSAMEDFRIDIML 140

Query: 140 GEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNDKDLSTIVSRSANI 199
             GP ARS+++ L PFTL+GATTR+G+LT+PLR RFGI  RLE+Y+ K L+TIV+RSANI
Sbjct: 141 DSGPNARSVQISLNPFTLIGATTRSGLLTSPLRARFGINARLEYYDAKLLTTIVTRSANI 200

Query: 200 LGLAIEDQGAYEIARRARGTPRIANRLLRRVRDYAEVRGKGQITKAVADMALNLLDVDER 259
           LG  I++  AYEIARR+RGTPRIAN LLRR RD+A+++G G IT  +A +AL+ LDVDE 
Sbjct: 201 LGAPIDEVAAYEIARRSRGTPRIANTLLRRTRDFADIKGNGTITLDIAKVALDALDVDEN 260

Query: 260 GFDHSDRRLLLTMIEKFDGGPVGVDNLAAAISEERHTIEDVLEPYLIQQGYIMRTPRGRV 319
           G D  D R+L T+IEKF GGPVG+  +A A  EE  TIE+V EP+LIQ+GY+ RT RGR+
Sbjct: 261 GLDEMDNRILTTIIEKFKGGPVGISTIATACGEEGETIEEVYEPFLIQEGYLKRTSRGRI 320

Query: 320 VTRHAYLHFGLNIPGRLG 337
            T  AY H  LNI    G
Sbjct: 321 ATELAYKH--LNIRPHFG 336